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In clinical treatment, identifying potential adverse reactions of drugs can help assist doctors in making medication decisions. In response to the problems in previous studies that features are high-dimensional and sparse, independent…

Quantitative Methods · Quantitative Biology 2024-07-30 Yufeng Li , Wenchao Zhao , Bo Dang , Xu Yan , Weimin Wang , Min Gao , Mingxuan Xiao

Graph representation learning (a.k.a. network embedding) is a significant topic of network analysis, due to its effectiveness to support various graph inference tasks. In this paper, we study the representation learning with multiple…

Social and Information Networks · Computer Science 2023-05-17 Meng Qin

Knowledge graphs enable data scientists to learn end-to-end on heterogeneous knowledge. However, most end-to-end models solely learn from the relational information encoded in graphs' structure: raw values, encoded as literal nodes, are…

Machine Learning · Computer Science 2023-09-06 W. X. Wilcke , P. Bloem , V. de Boer , R. H. van t Veer

An end-to-end trainable ConvNet architecture, that learns to harness the power of shape representation for matching disparate image pairs, is proposed. Disparate image pairs are deemed those that exhibit strong affine variations in scale,…

Computer Vision and Pattern Recognition · Computer Science 2018-11-27 Shefali Srivastava , Abhimanyu Chopra , Arun CS Kumar , Suchendra M. Bhandarkar , Deepak Sharma

Graph representation learning is a fast-growing field where one of the main objectives is to generate meaningful representations of graphs in lower-dimensional spaces. The learned embeddings have been successfully applied to perform various…

Machine Learning · Computer Science 2021-12-21 Md. Khaledur Rahman , Ariful Azad

Graph is a natural representation of data for a variety of real-word applications, such as knowledge graph mining, social network analysis and biological network comparison. For these applications, graph embedding is crucial as it provides…

Machine Learning · Computer Science 2020-01-24 Bitan Hou , Yujing Wang , Ming Zeng , Shan Jiang , Ole J. Mengshoel , Yunhai Tong , Jing Bai

Addressing the incompleteness problem in knowledge graph remains a significant challenge. Current knowledge graph completion methods have their limitations. For example, ComDensE is prone to overfitting and suffers from the degradation with…

Information Retrieval · Computer Science 2024-10-10 Chuhong Yang , Bin Li , Nan Wu

Knowledge graph embeddings are now a widely adopted approach to knowledge representation in which entities and relationships are embedded in vector spaces. In this chapter, we introduce the reader to the concept of knowledge graph…

Artificial Intelligence · Computer Science 2020-05-01 Federico Bianchi , Gaetano Rossiello , Luca Costabello , Matteo Palmonari , Pasquale Minervini

Proteins perform much of the work in living organisms, and consequently the development of efficient computational methods for protein representation is essential for advancing large-scale biological research. Most current approaches…

Quantitative Methods · Quantitative Biology 2023-06-09 Francesco Ceccarelli , Lorenzo Giusti , Sean B. Holden , Pietro Liò

Real-world knowledge graphs (KG) are mostly incomplete. The problem of recovering missing relations, called KG completion, has recently become an active research area. Knowledge graph (KG) embedding, a low-dimensional representation of…

Artificial Intelligence · Computer Science 2022-07-01 Minsang Kim , Seungjun Baek

We present a family of novel methods for embedding knowledge graphs into real-valued tensors. These tensor-based embeddings capture the ordered relations that are typical in the knowledge graphs represented by semantic web languages like…

Machine Learning · Computer Science 2022-08-25 Ankur Padia , Kostantinos Kalpakis , Francis Ferraro , Tim Finin

Most existing knowledge graphs suffer from incompleteness, which can be alleviated by inferring missing links based on known facts. One popular way to accomplish this is to generate low-dimensional embeddings of entities and relations, and…

Machine Learning · Computer Science 2020-09-25 Shikhar Vashishth , Soumya Sanyal , Vikram Nitin , Nilesh Agrawal , Partha Talukdar

Typical graph embeddings may not capture type-specific bipartite graph features that arise in such areas as recommender systems, data visualization, and drug discovery. Machine learning methods utilized in these applications would be better…

Machine Learning · Computer Science 2020-07-24 Justin Sybrandt , Ilya Safro

Knowledge graphs are inherently incomplete. Therefore substantial research has been directed toward knowledge graph completion (KGC), i.e., predicting missing triples from the information represented in the knowledge graph (KG). KG…

Machine Learning · Computer Science 2023-03-23 Aleksandar Pavlović , Emanuel Sallinger

With the explosion of graph-structured data, link prediction has emerged as an increasingly important task. Embedding methods for link prediction utilize neural networks to generate node embeddings, which are subsequently employed to…

Machine Learning · Computer Science 2023-06-21 Jun Fu , Xiaojuan Zhang , Shuang Li , Dali Chen

We present a novel extension to embedding-based knowledge graph completion models which enables them to perform open-world link prediction, i.e. to predict facts for entities unseen in training based on their textual description. Our model…

Artificial Intelligence · Computer Science 2020-01-10 Haseeb Shah , Johannes Villmow , Adrian Ulges , Ulrich Schwanecke , Faisal Shafait

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Knowledge Graph(KG) has gained traction as a machine-readable organization of real-world knowledge for analytics using artificial intelligence systems. Graph Neural Network(GNN), is proven to be an effective KG embedding technique that…

Machine Learning · Computer Science 2026-02-24 Rajesh Rajagopalamenon , Unnikrishnan Cheramangalath

The majority of knowledge graph embedding techniques treat entities and predicates as separate embedding matrices, using aggregation functions to build a representation of the input triple. However, these aggregations are lossy, i.e. they…

Computation and Language · Computer Science 2022-08-23 Alexander Kalinowski , Yuan An

Entity alignment (EA) seeks identical entities in different knowledge graphs, which is a long-standing task in the database research. Recent work leverages deep learning to embed entities in vector space and align them via nearest neighbor…

Computation and Language · Computer Science 2024-03-22 Xiaobin Tian , Zequn Sun , Wei Hu
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