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In this paper, we study the accuracy of Irving-Kirkwood type of formulas for the approximation of continuum quantities from atomistic simulations. Such formulas are derived by expressing the displacement, deformation gradient and stress in…

Computational Physics · Physics 2015-06-17 Jerry Zhijian Yang , Xiaojie Wu , Xiantao Li

A stress equilibration procedure for hyperelastic material models is proposed andanalyzed in this paper. Based on the displacement-pressure approximation computed with a stable finite element pair, it constructs, in a vertex-patch-wise…

Numerical Analysis · Mathematics 2019-05-07 Fleurianne Bertrand , Marcel Moldenhauer , Gerhard Starke

The peridynamic stress formula proposed by Lehoucq and Silling [1, 2] is cumbersome to be implemented in numerical computations. Here, we show that the peridynamic stress tensor has the exact mathematical expression as that of the first…

Classical Physics · Physics 2022-01-19 Jun Li , Shaofan Li , Xin Lai , Lisheng Liu

Molecular simulations can provide microscopic insight into the physical and chemical driving forces of complex molecular processes. Despite continued advancement of simulation methodology, model errors may lead to inconsistencies between…

Chemical Physics · Physics 2016-02-12 Joseph F. Rudzinski , Kurt Kremer , Tristan Bereau

Empirical force fields employed in molecular dynamics simulations of complex systems can be optimised to reproduce experimentally determined structural and thermodynamic properties. In contrast, experimental knowledge about the rates of…

Statistical Mechanics · Physics 2022-07-12 P. G. Bolhuis , Z. F. Brotzakis , B. G. Keller

We introduce conformal mixed finite element methods for $2$D and $3$D incompressible nonlinear elasticity in terms of displacement, displacement gradient, the first Piola-Kirchhoff stress tensor, and pressure, where finite elements for the…

Numerical Analysis · Mathematics 2019-10-31 Arzhang Angoshtari

Microscopic stress fields are widely used in molecular simulations to understand mechanical behavior. Recently, decomposition methods of multibody forces to central force pairs between the interacting particles have been proposed. Here, we…

Soft Condensed Matter · Physics 2016-11-23 Koh M. Nakagawa , Hiroshi Noguchi

Compression experiments are widely used to study the mechanical properties of materials at micro- and nanoscale. However, the conventional engineering stress measurement method used in these experiments neglects to account for the…

Materials Science · Physics 2025-07-24 Jalal Smiri , Oguz Umut Salman , Matteo Ghidelli , Ioan R. Ionescu

Available simulation methods, suitable to describe solid-solid phase transitions occurring upon increasing of presssure and/or temperature, are based on empirical interatomic potentials: this restriction reduces the predictive power, and…

Condensed Matter · Physics 2016-08-31 P. Focher , G. L. Chiarotti , M. Bernasconi , E. Tosatti , M. Parrinello

A first-principles method is presented to calculate elastic constants up to the fourth order of crystals with the cubic and hexagonal symmetries. The method relies on the numerical differentiation of the second Piola-Kirchhoff stress tensor…

Materials Science · Physics 2023-05-03 Abhiyan Pandit , Angelo Bongiorno

We introduce a new class of mixed finite element methods for 2D and 3D compressible nonlinear elasticity. The independent unknowns of these conformal methods are displacement, displacement gradient, and the first Piola-Kirchhoff stress…

Numerical Analysis · Mathematics 2019-10-22 Arzhang Angoshtari , Ali Gerami Matin

Motivated by the increasingly more important role of ab initio molecular dynamics models in material simulations, this work focuses on the definition of local stress, when the forces are determined from quantum-mechanical descriptions. Two…

Computational Physics · Physics 2019-07-24 Xiantao Li

In this paper, we study the numerical algorithm for a nonlinear poroelasticity model with nonlinear stress-strain relations. By using variable substitution, the original problem can be reformulated to a new coupled fluid-fluid system, that…

Numerical Analysis · Mathematics 2022-05-17 Zhihao Ge , Hairun Li , Tingting Li

Controlling instability in plasma is one of the central challenges in fusion energy research. Among the various sources of instability, kinetic effects play a significant role. In this work, we aim to suppress the instability induced by…

Numerical Analysis · Mathematics 2025-08-27 Jingcheng Lu , Li Wang , Jeff Calder

A new approach for integration of motion in many-body systems of interacting polyatomic molecules is proposed. It is based on splitting time propagation of pseudo-variables in a modified phase space, while the real translational and…

Statistical Mechanics · Physics 2009-11-13 Igor P. Omelyan

A finite-strain formulation is developed, implemented and tested for a constitutive model capable of describing the transition from granular to fully dense state during cold forming of ceramic powder. This constitutive model (as well as…

Materials Science · Physics 2015-06-19 S. Stupkiewicz , A. Piccolroaz , D. Bigoni

The interaction of screw dislocations with an applied stress is studied using atomistic simulations in conjunction with a continuum treatment of the role played by the far field boundary condition. A finite cell of atoms is used to consider…

Materials Science · Physics 2009-10-28 Vijay B. Shenoy , Rob Phillips

-Molecular simulations allow the study of properties and interactions of molecular systems. This article presents an improved version of the Adaptive Resolution Scheme that links two systems having atomistic (also called fine-grained) and…

Computational Engineering, Finance, and Science · Computer Science 2017-08-01 Iuliana Marin , Virgil Tudose , Anton Hadar , Nicolae Goga , Andrei Doncescu

We propose an isogeometric approach to model the deformation of active thin films using layered, nonlinear, Kirchhoff Love shells. Isogeometric Collocation and Galerkin formulations are employed to discretize the electrophysiological and…

The study is devoted to geometrically non-linear modelling of viscoplastic structures with residual stresses. We advocate and develop a special approach to residual stresses based on the transition between reference configurations. The…

Materials Science · Physics 2021-04-06 I. I. Tagiltsev , A. V. Shutov
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