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Flow-Imaging Microscopy (FIM) is commonly used in both academia and industry to characterize subvisible particles (those $\le 25 \mu m$ in size) in protein therapeutics. Pharmaceutical companies are required to record vast volumes of FIM…

Quantitative Methods · Quantitative Biology 2017-09-04 Christopher P. Calderon , Austin L. Daniels , Theodore W. Randolph

We propose a novel image set classification technique using linear regression models. Downsampled gallery image sets are interpreted as subspaces of a high dimensional space to avoid the computationally expensive training step. We estimate…

Computer Vision and Pattern Recognition · Computer Science 2017-01-11 Syed Afaq Ali Shah , Uzair Nadeem , Mohammed Bennamoun , Ferdous Sohel , Roberto Togneri

In this paper, we propose a novel deep learning method based on a Convolutional Neural Network (CNN) that simultaneously detects and geolocates plantation-rows while counting its plants considering highly-dense plantation configurations.…

Image compression is a critical tool in decreasing the cost of storage and improving the speed of transmission over the internet. While deep learning applications for natural images widely adopts the usage of lossy compression techniques,…

Image and Video Processing · Electrical Eng. & Systems 2024-09-26 Anvar Kurmukov , Bogdan Zavolovich , Aleksandra Dalechina , Vladislav Proskurov , Boris Shirokikh

The accurate classification of mass lesions in the adrenal glands (adrenal masses), detected with computed tomography (CT), is important for diagnosis and patient management. Adrenal masses can be benign or malignant and benign masses have…

Computer Vision and Pattern Recognition · Computer Science 2022-08-08 Lei Bi , Jinman Kim , Tingwei Su , Michael Fulham , David Dagan Feng , Guang Ning

The development of machine learning systems for the diagnosis of rare diseases is challenging mainly due the lack of data to study them. Despite this challenge, this paper proposes a system for the Computer Aided Diagnosis (CAD) of…

Computer Vision and Pattern Recognition · Computer Science 2019-02-01 Adrián Bazaga , Mònica Roldán , Carmen Badosa , Cecilia Jiménez-Mallebrera , Josep M. Porta

Many interesting tasks in image restoration can be cast as linear inverse problems. A recent family of approaches for solving these problems uses stochastic algorithms that sample from the posterior distribution of natural images given the…

Image and Video Processing · Electrical Eng. & Systems 2022-10-14 Bahjat Kawar , Michael Elad , Stefano Ermon , Jiaming Song

In chemical processing and bioprocessing, conventional online sensors are limited to measure only basic process variables like pressure and temperature, pH, dissolved O and CO$_2$ and viable cell density (VCD). The concentration of other…

Quantitative Methods · Quantitative Biology 2020-05-07 Semion Rozov

Segmentation of white matter lesions and deep grey matter structures is an important task in the quantification of magnetic resonance imaging in multiple sclerosis. In this paper we explore segmentation solutions based on convolutional…

In this work, we tackle the problem of crowd counting in images. We present a Convolutional Neural Network (CNN) based density estimation approach to solve this problem. Predicting a high resolution density map in one go is a challenging…

Computer Vision and Pattern Recognition · Computer Science 2018-07-27 Viresh Ranjan , Hieu Le , Minh Hoai

Microfluidic devices offer numerous advantages in medical applications, including the capture of single cells in microwell-based platforms for genomic analysis. As the cost of sequencing decreases, the demand for high-throughput single-cell…

Computational Engineering, Finance, and Science · Computer Science 2024-09-13 Xueying Zhao , Yan Chen , Yuefu Jiang , Amie Radenbaugh , Jamie Moskwa , Devon Jensen

Photoacoustic microscopy (PAM) has been a promising biomedical imaging technology in recent years. However, the point-by-point scanning mechanism results in low-speed imaging, which limits the application of PAM. Reducing sampling density…

Image and Video Processing · Electrical Eng. & Systems 2020-06-09 Jiasheng Zhou , Da He , Xiaoyu Shang , Zhendong Guo , Sung-liang Chen , Jiajia Luo

In digital pathology, cell detection and classification are often prerequisites to quantify cell abundance and explore tissue spatial heterogeneity. However, these tasks are particularly challenging for multiplex immunohistochemistry (mIHC)…

Image and Video Processing · Electrical Eng. & Systems 2019-08-05 Yeman Brhane Hagos , Priya Lakshmi Narayanan , Ayse U. Akarca , Teresa Marafioti , Yinyin Yuan

Automatic cell tracking in dense environments is plagued by inaccurate correspondences and misidentification of parent-offspring relationships. In this paper, we introduce a novel cell tracking algorithm named DenseTrack, which integrates…

Image and Video Processing · Electrical Eng. & Systems 2024-07-08 Tanjin Taher Toma , Yibo Wang , Andreas Gahlmann , Scott T. Acton

Recent trends show recognition accuracy increasing even more profoundly. Inference process of Deep Convolutional Neural Networks (DCNN) has a large number of parameters, requires a large amount of computation, and can be very slow. The…

Computer Vision and Pattern Recognition · Computer Science 2017-09-15 Ryuji Kamiya , Takayoshi Yamashita , Mitsuru Ambai , Ikuro Sato , Yuji Yamauchi , Hironobu Fujiyoshi

Motivation: Innovative microfluidic systems carry the promise to greatly facilitate spatio-temporal analysis of single cells under well-defined environmental conditions, allowing novel insights into population heterogeneity and opening new…

Machine Learning · Computer Science 2021-05-18 Dominik Stallmann , Jan P. Göpfert , Julian Schmitz , Alexander Grünberger , Barbara Hammer

Automated cell segmentation in microscopy images is essential for biomedical research, yet conventional methods are labor-intensive and prone to error. While deep learning-based approaches have proven effective, they often require large…

Computer Vision and Pattern Recognition · Computer Science 2024-11-20 Rüveyda Yilmaz , Kaan Keven , Yuli Wu , Johannes Stegmaier

We propose methodologies to train highly accurate and efficient deep convolutional neural networks (CNNs) for image super resolution (SR). A cascade training approach to deep learning is proposed to improve the accuracy of the neural…

Computer Vision and Pattern Recognition · Computer Science 2017-11-15 Haoyu Ren , Mostafa El-Khamy , Jungwon Lee

We present a novel deep convolutional neural network (DCNN) system for fine-grained image classification, called a mixture of DCNNs (MixDCNN). The fine-grained image classification problem is characterised by large intra-class variations…

Computer Vision and Pattern Recognition · Computer Science 2015-12-01 ZongYuan Ge , Alex Bewley , Christopher McCool , Ben Upcroft , Peter Corke , Conrad Sanderson

Cardiovascular magnetic resonance (CMR) imaging is a standard imaging modality for assessing cardiovascular diseases (CVDs), the leading cause of death globally. CMR enables accurate quantification of the cardiac chamber volume, ejection…

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