English
Related papers

Related papers: Machine learning applications to DNA subsequence a…

200 papers

In this work, we introduce a Denser Feature Network (DenserNet) for visual localization. Our work provides three principal contributions. First, we develop a convolutional neural network (CNN) architecture which aggregates feature maps at…

Computer Vision and Pattern Recognition · Computer Science 2021-03-15 Dongfang Liu , Yiming Cui , Liqi Yan , Christos Mousas , Baijian Yang , Yingjie Chen

We present an approach to learn a dense pixel-wise labeling from image-level tags. Each image-level tag imposes constraints on the output labeling of a Convolutional Neural Network (CNN) classifier. We propose Constrained CNN (CCNN), a…

Computer Vision and Pattern Recognition · Computer Science 2015-10-20 Deepak Pathak , Philipp Krähenbühl , Trevor Darrell

We propose a new strategy to improve the accuracy and robustness of image classification. First, we train a baseline CNN model. Then, we identify challenging regions in the feature space by identifying all misclassified samples, and…

Computer Vision and Pattern Recognition · Computer Science 2023-02-23 Fadoua Khmaissia , Hichem Frigui

Computer-assisted synthesis planning aims to help chemists find better reaction pathways faster. Finding viable and short pathways from sugar molecules to value-added chemicals can be modeled as a retrosynthesis planning problem with a…

Other Computer Science · Computer Science 2019-11-19 Peihong Jiang , Hieu Doan , Sandeep Madireddy , Rajeev Surendran Assary , Prasanna Balaprakash

Retrospective analysis of brain MRI scans acquired in the clinic has the potential to enable neuroimaging studies with sample sizes much larger than those found in research datasets. However, analysing such clinical images "in the wild" is…

Image and Video Processing · Electrical Eng. & Systems 2023-01-06 Benjamin Billot , Magdamo Colin , Sean E. Arnold , Sudeshna Das , Juan. E. Iglesias

Accurate segmentation of brain resection cavities (RCs) aids in postoperative analysis and determining follow-up treatment. Convolutional neural networks (CNNs) are the state-of-the-art image segmentation technique, but require large…

Ribozymes, RNA molecules with distinct 3D structures and catalytic activity, have widespread applications in synthetic biology and therapeutics. However, relatively little research has focused on leveraging deep learning to enhance our…

Machine Learning · Computer Science 2023-07-13 Andrew Kean Gao

Identification of abnormalities in red blood cells (RBC) is key to diagnosing a range of medical conditions from anaemia to liver disease. Currently this is done manually, a time-consuming and subjective process. This paper presents an…

Computer Vision and Pattern Recognition · Computer Science 2021-06-02 Annika Wong , Nantheera Anantrasirichai , Thanarat H. Chalidabhongse , Duangdao Palasuwan , Attakorn Palasuwan , David Bull

N-terminal coding sequence (NCS) influences gene expression by impacting the translation initiation rate. The NCS optimization problem is to find an NCS that maximizes gene expression. The problem is important in genetic engineering.…

Quantitative Methods · Quantitative Biology 2024-02-22 Zhanglu Yan , Weiran Chu , Yuhua Sheng , Kaiwen Tang , Shida Wang , Yanfeng Liu , Weng-Fai Wong

Unsupervised anomaly localization aims to identify anomalous regions that deviate from normal sample patterns. Most recent methods perform feature matching or reconstruction for the target sample with pre-trained deep neural networks.…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Katsuya Hotta , Chao Zhang , Yoshihiro Hagihara , Takuya Akashi

Next-generation sequencing (NGS) is a key technique for studying the DNA and RNA of organisms. However, identifying quality problems in NGS data across different experimental settings remains challenging. To develop automated…

Convolutional Neural Networks (CNNs) are a standard approach for visual recognition due to their capacity to learn hierarchical representations from raw pixels. In practice, practitioners often choose among (i) training a compact custom CNN…

Computer Vision and Pattern Recognition · Computer Science 2026-01-06 Annoor Sharara Akhand

Deep convolutional neural networks (CNN) has become the most promising method for object recognition, repeatedly demonstrating record breaking results for image classification and object detection in recent years. However, a very deep CNN…

Computer Vision and Pattern Recognition · Computer Science 2014-12-22 Yunchao Gong , Liu Liu , Ming Yang , Lubomir Bourdev

This technical report presents a comprehensive analysis of malware classification using OpCode sequences. Two distinct approaches are evaluated: traditional machine learning using n-gram analysis with Support Vector Machine (SVM), K-Nearest…

Cryptography and Security · Computer Science 2025-04-21 Varij Saini , Rudraksh Gupta , Neel Soni

Anomaly detection in SDN using data flow prediction is a difficult task. This problem is included in the category of time series and regression problems. Machine learning approaches are challenging in this field due to the manual selection…

Machine Learning · Computer Science 2024-02-12 Sajjad Salem , Salman Asoudeh

We preprocess the raw NMR spectrum and extract key characteristic features by using two different methodologies, called equidistant sampling and peak sampling for subsequent substructure pattern recognition; meanwhile may provide the…

Quantitative Methods · Quantitative Biology 2021-07-27 Chongcan Li , Yong Cong , Weihua Deng

In the wake of the explosive growth in smartphones and cyberphysical systems, there has been an accelerating shift in how data is generated away from centralised data towards on-device generated data. In response, machine learning…

Machine Learning · Computer Science 2021-12-09 Ross Drummond , Mathew C. Turner , Stephen R. Duncan

Tackling pattern recognition problems in areas such as computer vision, bioinformatics, speech or text recognition is often done best by taking into account task-specific statistical relations between output variables. In structured…

Machine Learning · Statistics 2016-03-14 Rein Houthooft , Filip De Turck

In supervised learning with distributional inputs in the two-stage sampling setup, relevant to applications like learning-based medical screening or causal learning, the inputs (which are probability distributions) are not accessible in the…

Machine Learning · Computer Science 2026-01-22 Christian Fiedler

We live in a period where bio-informatics is rapidly expanding, a significant quantity of genomic data has been produced as a result of the advancement of high-throughput genome sequencing technology, raising concerns about the costs…

Quantitative Methods · Quantitative Biology 2023-03-10 Mehedi Hasan Sarkar , Adnan Ferdous Ashrafi