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We introduce a new combinatorial method to encode knots and links with applications to knot invariants. Clasp diagrams defined in this paper are combinatorial blueprints for building knot diagrams out of full twists on two strings rather…

Geometric Topology · Mathematics 2019-11-11 Jacob Mostovoy , Michael Polyak

We study random knotting by considering knot and link diagrams as decorated, (rooted) topological maps on spheres and pulling them uniformly from among sets of a given number of vertices $n$, as first established in recent work with…

Geometric Topology · Mathematics 2017-05-24 Harrison Chapman

Data with low-dimensional nonlinear structure are ubiquitous in engineering and scientific problems. We study a model problem with such structure -- a binary classification task that uses a deep fully-connected neural network to classify…

Machine Learning · Statistics 2021-11-01 Tingran Wang , Sam Buchanan , Dar Gilboa , John Wright

In this paper, we study knot diagrams for which the underlying graph has treewidth two. We give a linear time algorithm for the following problem: given a knot diagram of treewidth two, does it represent the unknot? We also show that for a…

Data Structures and Algorithms · Computer Science 2019-04-09 Hans L. Bodlaender , Benjamin Burton , Fedor V. Fomin , Alexander Grigoriev

A knot is a circle piecewise-linearly embedded into the 3-sphere. The topology of a knot is intimately related to that of its exterior, which is the complement of an open regular neighborhood of the knot. Knots are typically encoded by…

Geometric Topology · Mathematics 2023-03-20 Nathan M. Dunfield , Malik Obeidin , Cameron Gates Rudd

In this paper, we interpret Deep Neural Networks with Complex Network Theory. Complex Network Theory (CNT) represents Deep Neural Networks (DNNs) as directed weighted graphs to study them as dynamical systems. We efficiently adapt CNT…

Machine Learning · Computer Science 2021-10-19 Emanuele La Malfa , Gabriele La Malfa , Giuseppe Nicosia , Vito Latora

The topological underpinnings are presented for a new algorithm which answers the question: `Is a given knot the unknot?' The algorithm uses the braid foliation technology of Bennequin and of Birman and Menasco. The approach is to consider…

Geometric Topology · Mathematics 2014-11-11 Joan S. Birman , Michael D. Hirsch

Knots are commonly represented and manipulated via diagrams, which are decorated planar graphs. When such a knot diagram has low treewidth, parameterized graph algorithms can be leveraged to ensure the fast computation of many invariants…

Computational Geometry · Computer Science 2023-03-16 Corentin Lunel , Arnaud de Mesmay

In a previous paper (q-alg/9501022) we suggested some algorithms that could be useful in solving the problem of knot classification. Here we continue this discussion by answering questions raised in that paper and by commenting on practical…

q-alg · Mathematics 2008-02-03 Charilaos Aneziris

Identifying symmetries in data sets is generally difficult, but knowledge about them is crucial for efficient data handling. Here we present a method how neural networks can be used to identify symmetries. We make extensive use of the…

Computational Physics · Physics 2020-03-31 Sven Krippendorf , Marc Syvaeri

In this study of the Reidemeister moves within the classical knot theory, we focus on hard diagrams of knots and links, categorizing them as either rigid or shaky based on their adaptability to certain moves. We establish that every link…

Geometric Topology · Mathematics 2025-10-14 Michal Jablonowski

Let $D$ be a knot diagram, and let ${\mathcal D}$ denote the set of diagrams that can be obtained from $D$ by crossing exchanges. If $D$ has $n$ crossings, then ${\mathcal D}$ consists of $2^n$ diagrams. A folklore argument shows that at…

Combinatorics · Mathematics 2017-10-19 Carolina Medina , Jorge Ramírez-Alfonsín , Gelasio Salazar

In this paper we use artificial neural networks to predict and help compute the values of certain knot invariants. In particular, we show that neural networks are able to predict when a knot is quasipositive with a high degree of accuracy.…

Geometric Topology · Mathematics 2016-10-19 Mark C. Hughes

We discuss the possibility of the existence of finite algorithms that may give distinct knot classes. In particular we present two attempts for such algorithms which seem promising, one based on knot projections on a plane, the other on…

High Energy Physics - Theory · Physics 2008-02-03 Charilaos Aneziris

We review the use of grid diagrams in the development of Heegaard Floer theory. We describe the construction of the combinatorial link Floer complex, and the resulting algorithm for unknot detection. We also explain how grid diagrams can be…

Geometric Topology · Mathematics 2012-10-16 Ciprian Manolescu

Deep neural networks (DNNs) play an increasingly important role in various computer systems. In order to create these networks, engineers typically specify a desired topology, and then use an automated training algorithm to select the…

Machine Learning · Computer Science 2021-08-13 Ori Lahav , Guy Katz

Graph neural networks (GNNs) are a popular class of machine learning models whose major advantage is their ability to incorporate a sparse and discrete dependency structure between data points. Unfortunately, GNNs can only be used when such…

Machine Learning · Computer Science 2020-06-22 Luca Franceschi , Mathias Niepert , Massimiliano Pontil , Xiao He

In recent years, deep neural networks (DNNs) have known an important rise in popularity. However, although they are state-of-the-art in many machine learning challenges, they still suffer from several limitations. For example, DNNs require…

Machine Learning · Computer Science 2021-10-11 Carlos Lassance , Myriam Bontonou , Mounia Hamidouche , Bastien Pasdeloup , Lucas Drumetz , Vincent Gripon

These notes present two normal surface theory algorithms to detect the unknot and use the split-link algorithm to prove that the figure-eight knot is knotted.

Geometric Topology · Mathematics 2023-11-08 Hakan Solak

Our goal is to one day take a photo of a knot and have a phone automatically recognize it. In this expository work, we explain a strategy to approximate this goal, using a mixture of modern machine learning methods (in particular…

Machine Learning · Computer Science 2025-10-09 Anne Dranowski , Yura Kabkov , Daniel Tubbenhauer