English
Related papers

Related papers: SBML2Julia: interfacing SBML with efficient nonlin…

200 papers

Random variables and their distributions are a central part in many areas of statistical methods. The Distributions.jl package provides Julia users and developers tools for working with probability distributions, leveraging Julia features…

Bridging cultures that have often been distant, Julia combines expertise from the diverse fields of computer science and computational science to create a new approach to numerical computing. Julia is designed to be easy and fast. Julia…

Mathematical Software · Computer Science 2015-07-21 Jeff Bezanson , Alan Edelman , Stefan Karpinski , Viral B. Shah

Agent based modelling is a simulation method in which autonomous agents interact with their environment and one another, given a predefined set of rules. It is an integral method for modelling and simulating complex systems, such as…

Multiagent Systems · Computer Science 2022-01-10 George Datseris , Ali R. Vahdati , Timothy C. DuBois

We present the software design of Gridap, a novel finite element library written exclusively in the Julia programming language, which is being used by several research groups world-wide to simulate complex physical phenomena such as…

Mathematical Software · Computer Science 2022-04-13 Francesc Verdugo , Santiago Badia

OptControl.jl(OptControl) implements that modeling optimal control problems with symbolic algebra system based on Julia language, and generates the corresponding numerical optimization codes to solve them with packages from Julia.…

Optimization and Control · Mathematics 2022-08-02 Jingyi Yang , Yuebao Yang , Mingtao Li

Differentiating through constrained optimization problems is increasingly central to learning, control, and large-scale decision-making systems, yet practical integration remains challenging due to solver specialization and interface…

Technical computing is a challenging application area for programming languages to address. This is evinced by the unusually large number of specialized languages in the area (e.g. MATLAB, R), and the complexity of common software stacks,…

Programming Languages · Computer Science 2018-08-13 Jeff Bezanson , Jake Bolewski , Jiahao Chen

Compilers are indispensable for transforming code written in high-level languages into performant machine code, but their general-purpose optimizations sometimes fall short. Domain experts might be aware of certain optimizations that the…

Programming Languages · Computer Science 2025-07-15 Jules Merckx , Tim Besard , Bjorn De Sutter

The julia package integrates the Julia programming language into Stata. Users can transfer data between Stata and Julia, issue Julia commands to analyze and plot, and pass results back to Stata. Julia's econometric ecosystem is not as…

Econometrics · Economics 2025-05-05 David Roodman

The importance of computers is continually increasing in radiotherapy. Efficient algorithms, implementations and the ability to leverage advancements in computer science are crucial to improve cancer care even further and deliver the best…

Medical Physics · Physics 2024-07-08 Renato Bellotti , Antony J. Lomax , Andreas Adelmann , Jan Hrbacek

As astronomical data grows in volume and complexity, the scalability of analysis software becomes increasingly important. At the same time, astrophysics analysis software relies heavily on open-source contributions, so languages and tools…

Instrumentation and Methods for Astrophysics · Physics 2024-02-01 Edward Berman , Jacqueline McCleary

We present a Julia-based interface to the precompiled HALLaR and cuHALLaR binaries for large-scale semidefinite programs (SDPs). Both solvers are established as fast and numerically stable, and accept problem data in formats compatible with…

Optimization and Control · Mathematics 2025-08-25 Jacob Aguirre , Diego Cifuentes , Vincent Guigues , Renato D. C. Monteiro , Victor Hugo Nascimento , Arnesh Sujanani

There are plenty of excellent plotting libraries. Each excels at a different use case: one is good for printed 2D publication figures, the other at interactive 3D graphics, a third has excellent L A TEX integration or is good for creating…

Current direct-collocation-based optimal control software is either easy to use or fast, but not both. This is a major limitation for users that are trying to formulate complex optimal control problems (OCPs) for use in on-line…

Mathematical Software · Computer Science 2020-05-05 Huckleberry Febbo , Paramsothy Jayakumar , Jeffrey L. Stein , Tulga Ersal

We present \texttt{MathOptAI.jl}, an open-source Julia library for embedding trained machine learning predictors into a JuMP model. \texttt{MathOptAI.jl} can embed a wide variety of neural networks, decision trees, and Gaussian Processes…

Machine Learning · Computer Science 2026-05-26 Oscar Dowson , Robert B Parker , Russel Bent

MomentClosure.jl is a Julia package providing automated derivation of the time-evolution equations of the moments of molecule numbers for virtually any chemical reaction network using a wide range of moment closure approximations. It…

Molecular Networks · Quantitative Biology 2021-05-13 Augustinas Sukys , Ramon Grima

Driven by increasing compute requirements for deep learning models, compiler developers have been looking for ways to target specialised hardware and heterogeneous systems more efficiently. The MLIR project has the goal to offer…

Programming Languages · Computer Science 2025-03-10 Jules Merckx

We present Trixi.jl, a Julia package for adaptive high-order numerical simulations of hyperbolic partial differential equations. Utilizing Julia's strengths, Trixi.jl is extensible, easy to use, and fast. We describe the main design choices…

Mathematical Software · Computer Science 2022-01-19 Hendrik Ranocha , Michael Schlottke-Lakemper , Andrew R. Winters , Erik Faulhaber , Jesse Chan , Gregor J. Gassner

We introduce CBXPy and ConsensusBasedX.jl, Python and Julia implementations of consensus-based interacting particle systems (CBX), which generalise consensus-based optimization methods (CBO) for global, derivative-free optimisation. The…

Optimization and Control · Mathematics 2024-12-04 Rafael Bailo , Alethea Barbaro , Susana N. Gomes , Konstantin Riedl , Tim Roith , Claudia Totzeck , Urbain Vaes

This paper presents libRoadRunner, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models \ expressed using Systems Biology Markup Language (SBML). SBML is the most widely…

Subcellular Processes · Quantitative Biology 2015-03-04 Endre T. Somogyi , Jean-Marie Bouteiller , James A. Glazier , Matthias König , Kyle Medley , Maciej H. Swat , Herbert M. Sauro