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Brain functional network has become an increasingly used approach in understanding brain functions and diseases. Many network construction methods have been developed, whereas the majority of the studies still used static pairwise Pearson's…

Neurons and Cognition · Quantitative Biology 2020-03-13 Zhen Zhou , Xiaobo Chen , Yu Zhang , Lishan Qiao , Renping Yu , Gang Pan , Han Zhang , Dinggang Shen

Neuron analysis provides insights into how knowledge is structured in representations and discovers the role of neurons in the network. In addition to developing an understanding of our models, neuron analysis enables various applications…

Computation and Language · Computer Science 2023-05-29 Fahim Dalvi , Hassan Sajjad , Nadir Durrani

mlpy is a Python Open Source Machine Learning library built on top of NumPy/SciPy and the GNU Scientific Libraries. mlpy provides a wide range of state-of-the-art machine learning methods for supervised and unsupervised problems and it is…

Mathematical Software · Computer Science 2012-03-02 Davide Albanese , Roberto Visintainer , Stefano Merler , Samantha Riccadonna , Giuseppe Jurman , Cesare Furlanello

Sophisticated visualization tools are essential for the presentation and exploration of human neuroimaging data. While two-dimensional orthogonal views of neuroimaging data are conventionally used to display activity and statistical…

As a machine-learned potential, the neuroevolution potential (NEP) method features exceptional computational efficiency and has been successfully applied in materials science. Constructing high-quality training datasets is crucial for…

Machine Learning · Computer Science 2025-06-03 Chengbing Chen , Yutong Li , Rui Zhao , Zhoulin Liu , Zheyong Fan , Gang Tang , Zhiyong Wang

The Libra Toolkit is a collection of algorithms for learning and inference with discrete probabilistic models, including Bayesian networks, Markov networks, dependency networks, and sum-product networks. Compared to other toolkits, Libra…

Machine Learning · Computer Science 2015-04-02 Daniel Lowd , Amirmohammad Rooshenas

NeurST is an open-source toolkit for neural speech translation. The toolkit mainly focuses on end-to-end speech translation, which is easy to use, modify, and extend to advanced speech translation research and products. NeurST aims at…

Computation and Language · Computer Science 2021-06-16 Chengqi Zhao , Mingxuan Wang , Qianqian Dong , Rong Ye , Lei Li

This paper presents a systematic literature review (SLR) on the explainability and interpretability of machine learning (ML) models within the context of predictive process mining, using the PRISMA framework. Given the rapid advancement of…

Machine Learning · Computer Science 2024-01-01 Nijat Mehdiyev , Maxim Majlatow , Peter Fettke

We present Darts, a Python machine learning library for time series, with a focus on forecasting. Darts offers a variety of models, from classics such as ARIMA to state-of-the-art deep neural networks. The emphasis of the library is on…

This paper describes an analytical modeling tool called Bitlet that can be used, in a parameterized fashion, to understand the affinity of workloads to processing-in-memory (PIM) as opposed to traditional computing. The tool uncovers…

Hardware Architecture · Computer Science 2019-10-24 Kunal Korgaonkar , Ronny Ronen , Anupam Chattopadhyay , Shahar Kvatinsky

We present the LM Transparency Tool (LM-TT), an open-source interactive toolkit for analyzing the internal workings of Transformer-based language models. Differently from previously existing tools that focus on isolated parts of the…

Computation and Language · Computer Science 2024-04-11 Igor Tufanov , Karen Hambardzumyan , Javier Ferrando , Elena Voita

Tsetlin Machines (TMs) have emerged as a compelling alternative to conventional deep learning methods, offering notable advantages such as smaller memory footprint, faster inference, fault-tolerant properties, and interpretability. Although…

Machine Learning · Computer Science 2024-11-14 K. Darshana Abeyrathna , Sara El Mekkaoui , Andreas Hafver , Christian Agrell

Summary: ipd is an open-source R software package for the downstream modeling of an outcome and its associated features where a potentially sizable portion of the outcome data has been imputed by an artificial intelligence or machine…

Machine learning (ML) in medicine has transitioned from research to concrete applications aimed at supporting several medical purposes like therapy selection, monitoring and treatment. Acceptance and effective adoption by clinicians and…

Knowledge Tracing (KT) models students' knowledge states based on learning interactions to predict performance. While deep learning-based KT models have boosted predictive accuracy, most models rely on deterministic vector embeddings and…

Artificial Intelligence · Computer Science 2026-05-12 Siyu Wu , Cong Xu , Wei Zhang

Epileptic Seizure is an abnormal neuronal exertion in the brain, affecting nearly 70 million of the world's population (Ngugi et al., 2010). So many open-source neuroimaging tools are used for metabolism checkups and analysis purposes. The…

Medical Physics · Physics 2023-08-16 Jayanthi Vajiram , Aishwarya Senthil , Utkarsh Maurya

We describe the development of a new toolkit for data analysis. The analysis package is based on Bayes' Theorem, and is realized with the use of Markov Chain Monte Carlo. This gives access to the full posterior probability distribution.…

Data Analysis, Statistics and Probability · Physics 2015-05-13 Allen Caldwell , Daniel Kollar , Kevin Kroeninger

We introduce giotto-tda, a Python library that integrates high-performance topological data analysis with machine learning via a scikit-learn-compatible API and state-of-the-art C++ implementations. The library's ability to handle various…

Selecting third-party software packages in open-source ecosystems like Python is challenging due to the large number of alternatives and limited transparent evidence for comparison. Generative AI tools are increasingly used in development…

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