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An accurate and detailed account of patient medications, including medication changes within the patient timeline, is essential for healthcare providers to provide appropriate patient care. Healthcare providers or the patients themselves…

Motivation: A perennial challenge for biomedical researchers and clinical practitioners is to stay abreast with the rapid growth of publications and medical notes. Natural language processing (NLP) has emerged as a promising direction for…

Computation and Language · Computer Science 2021-12-16 Robert Tinn , Hao Cheng , Yu Gu , Naoto Usuyama , Xiaodong Liu , Tristan Naumann , Jianfeng Gao , Hoifung Poon

Natural language processing (NLP) in the medical domain can underperform in real-world applications involving small datasets in a non-English language with few labeled samples and imbalanced classes. There is yet no consensus on how to…

Computation and Language · Computer Science 2024-10-01 Vincent Beliveau , Helene Kaas , Martin Prener , Claes N. Ladefoged , Desmond Elliott , Gitte M. Knudsen , Lars H. Pinborg , Melanie Ganz

The exponential growth of biomedical texts such as biomedical literature and electronic health records (EHRs), poses a significant challenge for clinicians and researchers to access clinical information efficiently. To tackle this…

Computation and Language · Computer Science 2023-07-17 Qianqian Xie , Zheheng Luo , Benyou Wang , Sophia Ananiadou

Pre-trained language models such as BERT have proven to be highly effective for natural language processing (NLP) tasks. However, the high demand for computing resources in training such models hinders their application in practice. In…

Computation and Language · Computer Science 2019-08-27 Siqi Sun , Yu Cheng , Zhe Gan , Jingjing Liu

Filtering and annotating textual data are routine tasks in many areas, like social media or news analytics. Automating these tasks allows to scale the analyses wrt. speed and breadth of content covered and decreases the manual effort…

Computation and Language · Computer Science 2024-06-27 Simon Münker , Kai Kugler , Achim Rettinger

Social telehealth has revolutionized healthcare by enabling patients to share symptoms and receive medical consultations remotely. Users frequently post symptoms on social media and online health platforms, generating a vast repository of…

Computation and Language · Computer Science 2025-02-04 Malak Mohamed , Rokaia Emad , Ali Hamdi

Pre-trained transformer language models (LMs) have in recent years become the dominant paradigm in applied NLP. These models have achieved state-of-the-art performance on tasks such as information extraction, question answering, sentiment…

Computation and Language · Computer Science 2025-04-14 Aidan Mannion , Thierry Chevalier , Didier Schwab , Lorraine Geouriot

Attention-based models have shown significant improvement over traditional algorithms in several NLP tasks. The Transformer, for instance, is an illustrative example that generates abstract representations of tokens inputted to an encoder…

Computation and Language · Computer Science 2019-11-15 Dhanasekar Sundararaman , Vivek Subramanian , Guoyin Wang , Shijing Si , Dinghan Shen , Dong Wang , Lawrence Carin

Recently, Natural Language Processing (NLP) has witnessed an impressive progress in many areas, due to the advent of novel, pretrained contextual representation models. In particular, Devlin et al. (2019) proposed a model, called BERT…

Computation and Language · Computer Science 2020-03-09 Debora Nozza , Federico Bianchi , Dirk Hovy

Fine-tuned Bidirectional Encoder Representations from Transformers (BERT)-based sequence classification models have proven to be effective for detecting Alzheimer's Disease (AD) from transcripts of human speech. However, previous research…

Computation and Language · Computer Science 2020-11-13 Aparna Balagopalan , Jekaterina Novikova

Recent breakthroughs of pretrained language models have shown the effectiveness of self-supervised learning for a wide range of natural language processing (NLP) tasks. In addition to standard syntactic and semantic NLP tasks, pretrained…

Computation and Language · Computer Science 2019-12-23 Wenhan Xiong , Jingfei Du , William Yang Wang , Veselin Stoyanov

Large scale contextual representation models, such as BERT, have significantly advanced natural language processing (NLP) in recently years. However, in certain area like healthcare, accessing diverse large scale text data from multiple…

Computation and Language · Computer Science 2020-02-21 Dianbo Liu , Tim Miller

Increasing model size when pretraining natural language representations often results in improved performance on downstream tasks. However, at some point further model increases become harder due to GPU/TPU memory limitations and longer…

Computation and Language · Computer Science 2020-02-11 Zhenzhong Lan , Mingda Chen , Sebastian Goodman , Kevin Gimpel , Piyush Sharma , Radu Soricut

This paper conducts a comprehensive investigation into applying large language models, particularly on BioBERT, in healthcare. It begins with thoroughly examining previous natural language processing (NLP) approaches in healthcare, shedding…

Artificial Intelligence · Computer Science 2023-10-13 Shyni Sharaf , V. S. Anoop

Summarizing patient clinical notes is vital for reducing documentation burdens. Current manual summarization makes medical staff struggle. We propose an automatic method using LLMs, but long inputs cause LLMs to lose context, reducing…

Artificial Intelligence · Computer Science 2024-11-15 Guoqing Zhang , Keita Fukuyama , Kazumasa Kishimoto , Tomohiro Kuroda

Developing the required technology to assist medical experts in their everyday activities is currently a hot topic in the Artificial Intelligence research field. Thus, a number of large language models (LLMs) and automated benchmarks have…

Computation and Language · Computer Science 2023-12-04 Iakes Goenaga , Aitziber Atutxa , Koldo Gojenola , Maite Oronoz , Rodrigo Agerri

Radiology reports are one of the main forms of communication between radiologists and other clinicians and contain important information for patient care. In order to use this information for research and automated patient care programs, it…

Computation and Language · Computer Science 2024-09-04 Grey Kuling , Belinda Curpen , Anne L. Martel

Mental health is a critical issue in modern society, and mental disorders could sometimes turn to suicidal ideation without adequate treatment. Early detection of mental disorders and suicidal ideation from social content provides a…

Computation and Language · Computer Science 2022-07-19 Shaoxiong Ji , Tianlin Zhang , Luna Ansari , Jie Fu , Prayag Tiwari , Erik Cambria

Large Transformer-based language models such as BERT have led to broad performance improvements on many NLP tasks. Domain-specific variants of these models have demonstrated excellent performance on a variety of specialised tasks. In legal…

Computation and Language · Computer Science 2021-09-16 Benjamin Clavié , Akshita Gheewala , Paul Briton , Marc Alphonsus , Rym Laabiyad , Francesco Piccoli