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Muscle cells with sarcomeric structure exhibit highly nontrivial passive mechanical response. The difficulty of its continuum modeling is due to the presence of long-range interactions transmitted by extended protein skeleton. To build a…

Biological Physics · Physics 2022-11-24 Fabio Staniscia , Lev Truskinovsky

Transitions from quiescence to collective migration in epithelia underlie wound healing and cancer invasion, yet their physical origin remains poorly understood. Here we show that quiescent epithelial monolayers store spatially contractile…

Soft Condensed Matter · Physics 2026-05-25 Richard Ho , Anna Lång , Emma Lång , Stig Ove Bøe , Luiza Angheluta

We introduce a model for describing the dynamics of large numbers of interacting cells. The fundamental dynamical variables in the model are sub-cellular elements, which interact with each other through phenomenological intra- and…

Quantitative Methods · Quantitative Biology 2007-05-23 T. J. Newman

We study the influence of cell-level mechanical heterogeneity in epithelial tissues using a vertex-based model. Heterogeneity in single cell stiffness is introduced as a quenched random variable in the preferred shape index($p_0$) for each…

Biological Physics · Physics 2019-08-07 Xinzhi Li , Amit Das , Dapeng Bi

When dealing with unsaturated wet granular materials, a fundamental question is: what is the effect of capillary cohesion on the bulk flow and yield behavior? We inwestigate the dense flow rheology of unsaturated granular materials through…

Soft Condensed Matter · Physics 2018-08-29 M. Badetti , A. Fall , F. Chevoir , P. Aimedieu , S. Rodts , J. -N. Roux

We study the flow behavior and unjamming transition in dense assemblies of actively deforming particles that periodically change size, a process that we refer to as breathing. Using extensive molecular dynamics simulations and a…

Soft Condensed Matter · Physics 2025-05-21 Sayantan Ghosh , Magali Le Goff , Pinaki Chaudhuri , Kirsten Martens

Modelling of mechanical behaviour of pre-stressed fibre-reinforced composites is considered in a geometrically exact setting. A general approach which includes two different reference configurations is employed: one configuration…

Computational Engineering, Finance, and Science · Computer Science 2021-03-15 I. I. Tagiltsev , A. V. Shutov

By embedding inert tracer particles (TPs) in a growing multicellular spheroid the local stresses on the cancer cells (CCs) can be measured. In order for this technique to be effective the unknown effect of the dynamics of the TPs on the CCs…

Biological Physics · Physics 2020-10-20 Himadri S. Samanta , Sumit Sinha , D. Thirumalai

Stimuli-responsive materials that modify their shape in response to changes in environmental conditions -- such as solute concentration, temperature, pH, and stress -- are widespread in nature and technology. Applications include micro- and…

Fluid Dynamics · Physics 2017-07-05 Lefteris I. Kosmidis , Kaare H. Jensen

The spread of metastases is a crucial process in which some questions remain unanswered. In this work, we focus on tumor cells circulating in the bloodstream, the so-called Circulating Tumor Cells (CTCs). Our aim is to characterize their…

Tissues and Organs · Quantitative Biology 2025-01-22 Giorgia Ciavolella , Julien Granet , Jacky Goetz , Nael Osmani , Christèle Etchegaray , Annabelle Collin

Previous studies on nonspherical particle-fluid interaction were mostly confined to elongated fiber-like particles, which were observed to induce turbulence drag reduction. However, with the presence of tiny disk-like particles how wall…

Fluid Dynamics · Physics 2022-01-03 Ze Wang , Chun-Xiao Xu , Lihao Zhao

We use a large suite of hydrodynamical simulations of binary galaxy mergers to construct and calibrate a physical prescription for computing the effective radii and velocity dispersions of spheroids. We implement this prescription within a…

Astrophysics of Galaxies · Physics 2015-06-22 Lauren A. Porter , Rachel S. Somerville , Joel R. Primack , Peter H. Johansson

An adequate control of cell response in tissue engineering applications is of utmost importance to obtain products suitable to clinical practice. This paper is the first part of a series of two connected publications in which we study via…

Tissues and Organs · Quantitative Biology 2015-12-08 Chiara Lelli , Riccardo Sacco , Paola Causin , Manuela T. Raimondi

Endocytosis is an essential process by which cells internalize a piece of plasma membrane and material from the outside. In cells with turgor, pressure opposes membrane defor- mations, and increases the amount of force that has to be…

Biological Physics · Physics 2016-02-17 Serge Dmitrieff , François Nédélec

Known as one of the hallmarks of cancer [30], cancer cell invasion of human body tissue is a complicated spatio-temporal multiscale process which enables a localised solid tumour to transform into a systemic, metastatic and fatal disease.…

Dynamical Systems · Mathematics 2016-03-25 Lu Peng , Dumitru Trucu , Ping Lin , Alastair Thompson , Mark A. J. Chaplain

We consider a multiscale approach based on immersed methods for the efficient computational modeling of tissues composed of an elastic matrix (in two or three-dimensions) and a thin vascular structure (treated as a co-dimension two…

Numerical Analysis · Mathematics 2021-11-18 Luca Heltai , Alfonso Caiazzo

Cell invasion and spatial pattern formation are two distinct manifestations of cellular self-organisation in development, regeneration, and disease. Here, we develop and analyse a unified theoretical framework that links these two seemingly…

Tissues and Organs · Quantitative Biology 2026-04-30 Carles Falcó , Samuel W. S. Johnson , Mohit P. Dalwadi , Philip K. Maini

Large deformations play a central role in the shape transformations of slender active and biological structures. A classical example is the eversion of the Volvox embryo, which demonstrates the need for shell theories that can describe…

Soft Condensed Matter · Physics 2026-03-18 Matteo Taffetani , Matteo Pezzulla

Active nematic models explain the topological defects and flow patterns observed in epithelial tissues, but the nature of active stress-whether it is extensile or contractile, a key parameter of the theory-is not well established…

Soft Condensed Matter · Physics 2025-11-11 Jan Rozman , Sumesh P. Thampi , Julia M. Yeomans

We developed simulation methodology to assess eventual therapeutic efficiency of exogenous multiparametric changes in a four-component cellular system described by the system of ordinary differential equations. The method is numerically…

Tissues and Organs · Quantitative Biology 2018-06-05 Denis Horváth , Branislav Brutovsky