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We present graph-based modeling abstractions to represent cyber-physical dependencies arising in complex systems. Specifically, we propose an algebraic graph abstraction to capture physical connectivity in complex optimization models and a…

Optimization and Control · Mathematics 2018-12-13 Jordan Jalving , Yankai Cao , Victor M. Zavala

Chemellia is an open-source framework for atomistic machine learning in the Julia programming language. The framework takes advantage of Julia's high speed as well as the ability to share and reuse code and interfaces through the paradigm…

Computational Engineering, Finance, and Science · Computer Science 2023-05-23 Anant Thazhemadam , Dhairya Gandhi , Venkatasubramanian Viswanathan , Rachel C. Kurchin

OutlierDetection.jl is an open-source ecosystem for outlier detection in Julia. It provides a range of high-performance outlier detection algorithms implemented directly in Julia. In contrast to previous packages, our ecosystem enables the…

Machine Learning · Computer Science 2022-11-10 David Muhr , Michael Affenzeller , Anthony D. Blaom

This paper covers two major subjects: First, the presentation of a new open-source library called FMI.jl for integrating FMI into the Julia programming environment by providing the possibility to load, parameterize and simulate FMUs.…

Machine Learning · Computer Science 2022-09-09 Tobias Thummerer , Josef Kircher , Lars Mikelsons

This article introduces new acceleration methods for fixed-point iterations. Extrapolations are computed using two or three mappings alternately and a new type of step length is proposed with good properties for nonlinear applications. The…

Optimization and Control · Mathematics 2021-08-17 Nicolas Lepage-Saucier

Energy system models have become indispensable tools for planning future energy systems by providing insights into different development trajectories. However, sustainable systems with high shares of renewable energy are characterized by…

Computational Engineering, Finance, and Science · Computer Science 2018-08-27 Simon Hilpert , Cord Kaldemeyer , Uwe Krien , Stefan Günther , Clemens Wingenbach , Guido Plessmann

We present FrankWolfe.jl, an open-source implementation of several popular Frank-Wolfe and Conditional Gradients variants for first-order constrained optimization. The package is designed with flexibility and high-performance in mind,…

Optimization and Control · Mathematics 2021-10-06 Mathieu Besançon , Alejandro Carderera , Sebastian Pokutta

Marginal effects analysis is fundamental to interpreting statistical models, yet existing implementations face computational constraints that limit analysis at scale. We introduce two Julia packages that address this gap. Margins.jl…

Computation · Statistics 2026-01-13 Eric Feltham

Microstructure.jl is a Julia package designed for probabilistic estimation of tissue microstructural parameters from diffusion or combined diffusion-relaxometry MRI data. It provides a flexible and extensible framework for defining…

Medical Physics · Physics 2025-05-01 Ting Gong , Anastasia Yendiki

Is there a way for a designer to evaluate the performance of a given hood frame geometry without spending significant time on simulation setup? This paper seeks to address this challenge by developing a multimodal machine-learning (MMML)…

Machine Learning · Computer Science 2025-09-16 Abhishek Indupally , Satchit Ramnath

We present JDLL, an agile Java library that offers a comprehensive toolset/API to unify the development of high-end applications of DL for bioimage analysis and to streamline their installation and maintenance. JDLL provides all the…

Motivation: Flux balance analysis, and its variants, are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered…

Quantitative Methods · Quantitative Biology 2016-11-17 Laurent Heirendt , Ronan M. T. Fleming , Ines Thiele

Conditional human motion generation remains a fundamental challenge in computer vision and robotics. Despite significant progress, current methods are often constrained by fixed modality configurations and task-specific architectures,…

Computer Vision and Pattern Recognition · Computer Science 2026-05-29 Yiheng Li , Zhuo Li , Ruibing Hou , Yingjie Chen , Hong Chang , Hao Liu , Shiguang Shan

Geomagnetic disturbances and E3 high-altitude electromagnetic pulse events pose a substantial threat to the electrical grid by adversely impacting and damaging high-voltage transmission networks and equipment. To evaluate the risks and…

Systems and Control · Electrical Eng. & Systems 2021-04-08 Adam Mate , Arthur K. Barnes , Russell W. Bent , Eduardo Cotilla-Sanchez

In this technical report, we present jLDADMM---an easy-to-use Java toolkit for conventional topic models. jLDADMM is released to provide alternatives for topic modeling on normal or short texts. It provides implementations of the Latent…

Information Retrieval · Computer Science 2018-08-14 Dat Quoc Nguyen

Simulation has become an essential component of designing and developing scientific experiments. The conventional procedural approach to coding simulations of complex experiments is often error-prone, hard to interpret, and inflexible,…

Computational Physics · Physics 2023-08-09 Peter Sun , John A. Marohn

We present Trixi.jl, a Julia package for adaptive high-order numerical simulations of hyperbolic partial differential equations. Utilizing Julia's strengths, Trixi.jl is extensible, easy to use, and fast. We describe the main design choices…

Mathematical Software · Computer Science 2022-01-19 Hendrik Ranocha , Michael Schlottke-Lakemper , Andrew R. Winters , Erik Faulhaber , Jesse Chan , Gregor J. Gassner

We introduce ClimateMachine, a new open-source atmosphere modeling framework using the Julia language to be performance portable on central processing units (CPUs) and graphics processing units (GPUs). ClimateMachine uses a common framework…

Energy system optimization models (ESOMs) should be used in an interactive way to uncover knife-edge solutions, explore alternative system configurations, and suggest different ways to achieve policy objectives under conditions of deep…

Physics and Society · Physics 2019-12-10 Joseph F. DeCarolis , Samaneh Babaee , Binghui Li , Suyash Kanungo

Co-developing scientific algorithms and hardware accelerators requires domain-specific knowledge and large engineering resources. This leads to a slow development pace and high project complexity, which creates a barrier to entry that is…

Software Engineering · Computer Science 2025-03-13 Benedict Short , Ian McInerney , John Wickerson
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