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The paper proposes to employ deep convolutional neural networks (CNNs) to classify noncoding RNA (ncRNA) sequences. To this end, we first propose an efficient approach to convert the RNA sequences into images characterizing their…

Computer Vision and Pattern Recognition · Computer Science 2020-08-25 Brian McClannahan , Krushi Patel , Usman Sajid , Cuncong Zhong , Guanghui Wang

This study introduces a novel unsupervised medical image feature extraction method that employs spatial stratification techniques. An objective function based on weight is proposed to achieve the purpose of fast image recognition. The…

Image and Video Processing · Electrical Eng. & Systems 2024-06-28 Qishi Zhan , Dan Sun , Erdi Gao , Yuhan Ma , Yaxin Liang , Haowei Yang

A major issue in the association of genes to neuroimaging phenotypes is the high dimension of both genetic data and neuroimaging data. In this article, we tackle the latter problem with an eye toward developing solutions that are relevant…

Quantitative Methods · Quantitative Biology 2023-07-03 Cédric Beaulac , Sidi Wu , Erin Gibson , Michelle F. Miranda , Jiguo Cao , Leno Rocha , Mirza Faisal Beg , Farouk S. Nathoo

Deep learning algorithms offer a powerful means to automatically analyze the content of medical images. However, many biological samples of interest are primarily transparent to visible light and contain features that are difficult to…

Computer Vision and Pattern Recognition · Computer Science 2017-09-22 Roarke Horstmeyer , Richard Y. Chen , Barbara Kappes , Benjamin Judkewitz

Over the past decade deep learning has revolutionized the field of computer vision, with convolutional neural network models proving to be very effective for image classification benchmarks. However, a fundamental theoretical questions…

Computer Vision and Pattern Recognition · Computer Science 2023-07-04 Vinoth Nandakumar , Arush Tagade , Tongliang Liu

Based on the BioBricks standard, restriction synthesis is a novel catabolic iterative DNA synthesis method that utilizes endonucleases to synthesize a query sequence from a reference sequence. In this work, the reference sequence is built…

Signal Processing · Electrical Eng. & Systems 2020-12-14 Ethan J. Moyer , Anup Das

In this paper, we propose a machine learning-based method for automatically classifying honey botanical origins. Dataset preparation, feature extraction, and classification are the three main steps of the proposed method. We use a class…

Computer Vision and Pattern Recognition · Computer Science 2025-08-04 Mokhtar A. Al-Awadhi , Ratnadeep R. Deshmukh

An image retrieval method based on convolution neural network and dimension reduction is proposed in this paper. Convolution neural network is used to extract high-level features of images, and to solve the problem that the extracted…

Computer Vision and Pattern Recognition · Computer Science 2019-01-15 Zhihao Cao , Shaomin Mu , Yongyu Xu , Mengping Dong

Data-efficient image classification is a challenging task that aims to solve image classification using small training data. Neural network-based deep learning methods are effective for image classification, but they typically require…

Neural and Evolutionary Computing · Computer Science 2022-12-05 Ying Bi , Bing Xue , Mengjie Zhang

Deep learning based approaches are now widely used across biophysics to help automate a variety of tasks including image segmentation, feature selection, and deconvolution. However, the presence of multiple competing deep learning…

Image and Video Processing · Electrical Eng. & Systems 2025-01-31 J Shepard Bryan , Pedro Pessoa , Meyam Tavakoli , Steve Presse

Automatic classification of pigmented, non-pigmented, and depigmented non-melanocytic skin lesions have garnered lots of attention in recent years. However, imaging variations in skin texture, lesion shape, depigmentation contrast, lighting…

Computer Vision and Pattern Recognition · Computer Science 2022-09-07 Suraj Mishra , Yizhe Zhang , Li Zhang , Tianyu Zhang , X. Sharon Hu , Danny Z. Chen

In this work we present a system based on a Deep Learning approach, by using a Convolutional Neural Network, capable of classifying protein chains of amino acids based on the protein description contained in the Protein Data Bank. Each…

Machine Learning · Computer Science 2021-11-04 Damiano Perri , Marco Simonetti , Andrea Lombardi , Noelia Faginas-Lago , Osvaldo Gervasi

Recent studies in DNA sequence classification have leveraged sophisticated machine learning techniques, achieving notable accuracy in categorizing complex genomic data. Among these, methods such as k-mer counting have proven effective in…

Genomics · Quantitative Biology 2024-01-26 Şükrü Ozan

Deep learning based on deep neural networks has been very successful in many practical applications, but it lacks enough theoretical understanding due to the network architectures and structures. In this paper we establish some analysis for…

Machine Learning · Computer Science 2024-01-03 Jianfei Li , Han Feng , Ding-Xuan Zhou

Single-particle trajectories measured in microscopy experiments contain important information about dynamic processes undergoing in a range of materials including living cells and tissues. However, extracting that information is not a…

Quantitative Methods · Quantitative Biology 2019-09-25 Patrycja Kowalek , Hanna Loch-Olszewska , Janusz Szwabiński

Graphs, comprising nodes and edges, visually depict relationships and structures, posing challenges in extracting high-level features due to their intricate connections. Multiple connections introduce complexities in discovering patterns,…

Machine Learning · Computer Science 2024-11-12 Masoud Kargar , Nasim Jelodari , Alireza Assadzadeh

In many modern computer application problems, the classification of image data plays an important role. Among many different supervised machine learning models, convolutional neural networks (CNNs) and linear discriminant analysis (LDA) as…

Computer Vision and Pattern Recognition · Computer Science 2024-11-01 Axel Klawonn , Martin Lanser , Janine Weber

Purpose: This study aimed to enhance protein sequence classification using natural language processing (NLP) techniques while addressing the impact of sequence similarity on model performance. We compared various machine learning and deep…

Quantitative Methods · Quantitative Biology 2025-05-26 Huma Perveen , Julie Weeds

The popularity of Artificial intelligence and machine learning have prompted researchers to use it in the recent researches. The proposed method uses K-Nearest Neighbor (KNN) algorithm for segmentation of medical images, extracting of image…

Image and Video Processing · Electrical Eng. & Systems 2023-03-17 Ayesha Heena , Nagashettappa Biradar , Najmuddin M. Maroof , Surbhi Bhatia , Rashmi Agarwal , Kanta Prasad

Race classification is a long-standing challenge in the field of face image analysis. The investigation of salient facial features is an important task to avoid processing all face parts. Face segmentation strongly benefits several face…

Computer Vision and Pattern Recognition · Computer Science 2021-04-07 Khalil Khan , Jehad Ali , Irfan Uddin , Sahib Khan , Byeong-hee Roh