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This doctoral thesis improves the transfer learning for sequence labeling tasks by adapting pre-trained neural language models. The proposed improvements in transfer learning involve introducing a multi-task model that incorporates an…

Computation and Language · Computer Science 2025-10-24 David Dukić

This work investigates multiple approaches to Named Entity Recognition (NER) for text in Electronic Health Record (EHR) data. In particular, we look into the application of (i) rule-based, (ii) deep learning and (iii) transfer learning…

Transfer learning allows practitioners to recognize and apply knowledge learned in previous tasks (source task) to new tasks or new domains (target task), which share some commonality. The two important factors impacting the performance of…

Computer Vision and Pattern Recognition · Computer Science 2018-06-01 Michael Bernico , Yuntao Li , Dingchao Zhang

Named entity recognition (NER) stands as a fundamental and pivotal task within the realm of Natural Language Processing. Particularly within the domain of Biomedical Method NER, this task presents notable challenges, stemming from the…

Computation and Language · Computer Science 2024-07-01 Chen Tang , Bohao Yang , Kun Zhao , Bo Lv , Chenghao Xiao , Frank Guerin , Chenghua Lin

Shortage of annotated data is one of the greatest bottlenecks in biomedical image analysis. Meta learning studies how learning systems can increase in efficiency through experience and could thus evolve as an important concept to overcome…

Computer Vision and Pattern Recognition · Computer Science 2021-07-09 Patrick Godau , Lena Maier-Hein

Humans are incredibly good at transferring knowledge from one domain to another, enabling rapid learning of new tasks. Likewise, transfer learning has enabled enormous success in many computer vision problems using pretraining. However, the…

Computer Vision and Pattern Recognition · Computer Science 2022-01-19 Yipeng Zhang , Tyler L. Hayes , Christopher Kanan

Consider the problem of improving the estimation of conditional average treatment effects (CATE) for a target domain of interest by leveraging related information from a source domain with a different feature space. This heterogeneous…

Machine Learning · Computer Science 2022-10-13 Ioana Bica , Mihaela van der Schaar

Although deep learning techniques have shown significant achievements, they frequently depend on extensive amounts of hand-labeled data and tend to perform inadequately in few-shot scenarios. The objective of this study is to devise a…

Computation and Language · Computer Science 2024-10-28 Leilei Su , Jian Chen , Yifan Peng , Cong Sun

From the nano-scale to the macro-scale, biological tissue is spatially heterogeneous. Even when tissue behavior is well understood, the exact subject specific spatial distribution of material properties is often unknown. And, when…

Tissues and Organs · Quantitative Biology 2020-11-02 Emma Lejeune , Bill Zhao

In the legal domain it is important to differentiate between words in general, and afterwards to link the occurrences of the same entities. The topic to solve these challenges is called Named-Entity Linking (NEL). Current supervised neural…

Machine Learning · Computer Science 2018-10-17 Ahmed Elnaggar , Robin Otto , Florian Matthes

When applying deep learning to remote sensing data in archaeological research, a notable obstacle is the limited availability of suitable datasets for training models. The application of transfer learning is frequently employed to mitigate…

Computer Vision and Pattern Recognition · Computer Science 2023-10-20 Gregory Sech , Paolo Soleni , Wouter B. Verschoof-van der Vaart , Žiga Kokalj , Arianna Traviglia , Marco Fiorucci

Transfer learning is a widely used method to build high performing computer vision models. In this paper, we study the efficacy of transfer learning by examining how the choice of data impacts performance. We find that more pre-training…

Computer Vision and Pattern Recognition · Computer Science 2018-12-13 Jiquan Ngiam , Daiyi Peng , Vijay Vasudevan , Simon Kornblith , Quoc V. Le , Ruoming Pang

Named Entity Recognition and Intent Classification are among the most important subfields of the field of Natural Language Processing. Recent research has lead to the development of faster, more sophisticated and efficient models to tackle…

Computation and Language · Computer Science 2022-11-07 Sofia Rizou , Antonia Paflioti , Angelos Theofilatos , Athena Vakali , George Sarigiannidis , Konstantinos Ch. Chatzisavvas

Named Entity Recognition seeks to extract substrings within a text that name real-world objects and to determine their type (for example, whether they refer to persons or organizations). In this survey, we first present an overview of…

Computation and Language · Computer Science 2024-12-23 Imed Keraghel , Stanislas Morbieu , Mohamed Nadif

Transfer effects manifest themselves both during training using a fixed data set and in inductive inference using accumulating data. We hypothesize that perturbing the data set by including more samples, instead of perturbing the model by…

Machine Learning · Computer Science 2026-01-01 András Millinghoffer , Bence Bolgár , Péter Antal

There are a few challenges related to the task of biomedical named entity recognition, which are: the existing methods consider a fewer number of biomedical entities (e.g., disease, symptom, proteins, genes); and these methods do not…

Computation and Language · Computer Science 2022-07-05 Shaina Raza , Brian Schwartz

Biomedical entity linking (BioEL) has achieved remarkable progress with the help of pre-trained language models. However, existing BioEL methods usually struggle to handle rare and difficult entities due to long-tailed distribution. To…

Computation and Language · Computer Science 2023-12-18 Zhenxi Lin , Ziheng Zhang , Xian Wu , Yefeng Zheng

Modern data analytics take advantage of ensemble learning and transfer learning approaches to tackle some of the most relevant issues in data analysis, such as lack of labeled data to use to train the analysis models, sparsity of the…

Background and Objective: Biomedical Named Entity Recognition (BioNER) is a foundational task in medical informatics, crucial for downstream applications like drug discovery and clinical trial matching. However, adapting general-domain…

Computation and Language · Computer Science 2025-12-30 Jian Chen , Leilei Su , Cong Sun

Multitask learning is widely used in practice to train a low-resource target task by augmenting it with multiple related source tasks. Yet, naively combining all the source tasks with a target task does not always improve the prediction…

Machine Learning · Computer Science 2023-12-29 Dongyue Li , Huy L. Nguyen , Hongyang R. Zhang
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