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Domain adaptation is an effective solution to data scarcity in low-resource scenarios. However, when applied to token-level tasks such as bioNER, domain adaptation methods often suffer from the challenging linguistic characteristics that…

Traditional biomedical version of embeddings obtained from pre-trained language models have recently shown state-of-the-art results for relation extraction (RE) tasks in the medical domain. In this paper, we explore how to incorporate…

Adverse drug reaction (ADR) is widely concerned for public health issue. ADRs are one of most common causes to withdraw some drugs from market. Prescription event monitoring (PEM) is an important approach to detect the adverse drug…

Recent advances in natural language processing (NLP) can be largely attributed to the advent of pre-trained language models such as BERT and RoBERTa. While these models demonstrate remarkable performance on general datasets, they can…

The use of transfer learning methods is largely responsible for the present breakthrough in Natural Learning Processing (NLP) tasks across multiple domains. In order to solve the problem of sentiment detection, we examined the performance…

Speculation is a naturally occurring phenomena in textual data, forming an integral component of many systems, especially in the biomedical information retrieval domain. Previous work addressing cue detection and scope resolution (the two…

Neural network based sequence-to-sequence models in an encoder-decoder framework have been successfully applied to solve Question Answering (QA) problems, predicting answers from statements and questions. However, almost all previous models…

Backgrounds: Information extraction (IE) is critical in clinical natural language processing (NLP). While large language models (LLMs) excel on generative tasks, their performance on extractive tasks remains debated. Methods: We…

Transformer-based text classifiers such as BERT, RoBERTa, T5, and GPT have shown strong performance in natural language processing tasks but remain vulnerable to adversarial examples. These vulnerabilities raise significant security…

In this paper, we focus on the classification of tweets as sources of potential signals for adverse drug effects (ADEs) or drug reactions (ADRs). Following the intuition that text and drug structure representations are complementary, we…

Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently…

Attention-based long short-term memory (LSTM) networks have proven to be useful in aspect-level sentiment classification. However, due to the difficulties in annotating aspect-level data, existing public datasets for this task are all…

Biomedical entity linking aims to map biomedical mentions, such as diseases and drugs, to standard entities in a given knowledge base. The specific challenge in this context is that the same biomedical entity can have a wide range of names,…

In this work, we examine the ability of NER models to use contextual information when predicting the type of an ambiguous entity. We introduce NRB, a new testbed carefully designed to diagnose Name Regularity Bias of NER models. Our results…

Suicide is a critical global health problem involving more than 700,000 deaths yearly, particularly among young adults. Many people express their suicidal thoughts on social media platforms such as Reddit. This paper evaluates the…

Biomedical events describe complex interactions between various biomedical entities. Event trigger is a word or a phrase which typically signifies the occurrence of an event. Event trigger identification is an important first step in all…

This paper presents a novel approach for multi-label emotion detection, where Llama-3 is used to generate explanatory content that clarifies ambiguous emotional expressions, thereby enhancing RoBERTa's emotion classification performance. By…

Existing literature on Question Answering (QA) mostly focuses on algorithmic novelty, data augmentation, or increasingly large pre-trained language models like XLNet and RoBERTa. Additionally, a lot of systems on the QA leaderboards do not…

Understanding natural language involves recognizing how multiple event mentions structurally and temporally interact with each other. In this process, one can induce event complexes that organize multi-granular events with temporal order…

In this paper, we develop a family of bivariate beta distributions that encapsulate both positive and negative correlations, and which can be of general interest for Bayesian inference. We then invoke a use of these bivariate distributions…