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Given an undirected, weighted graph, the minimum spanning tree (MST) is a tree that connects all of the vertices of the graph with minimum sum of edge weights. In real world applications, network designers often seek to quickly find a…

Data Structures and Algorithms · Computer Science 2023-01-02 David A. Bader , Paul Burkhardt

The vast majority of Dimensionality Reduction (DR) techniques rely on second-order statistics to define their optimization objective. Even though this provides adequate results in most cases, it comes with several shortcomings. The methods…

Computer Vision and Pattern Recognition · Computer Science 2017-08-21 Nikolaos Passalis , Anastasios Tefas

With the rapid advancement of Spatial Resolved Transcriptomics (SRT) technology, it is now possible to comprehensively measure gene transcription while preserving the spatial context of tissues. Spatial domain identification and gene…

Genomics · Quantitative Biology 2024-08-14 Donghai Fang , Fangfang Zhu , Dongting Xie , Wenwen Min

Recent research on graph embedding has achieved success in various applications. Most graph embedding methods preserve the proximity in a graph into a manifold in an embedding space. We argue an important but neglected problem about this…

Machine Learning · Computer Science 2020-12-01 Hongbin Pei , Bingzhe Wei , Kevin Chen-Chuan Chang , Chunxu Zhang , Bo Yang

Targeted color-dots with varying shapes and sizes in images are first exhaustively identified, and then their multiscale 2D geometric patterns are extracted for testing spatial uniformness in a progressive fashion. Based on color theory in…

Computer Vision and Pattern Recognition · Computer Science 2021-06-09 Shuting Liao , Li-Yu Liu , Ting-An Chen , Kuang-Yu Chen , Fushing Hsieh

Auto-encoders have emerged as a successful framework for unsupervised learning. However, conventional auto-encoders are incapable of utilizing explicit relations in structured data. To take advantage of relations in graph-structured data,…

Machine Learning · Computer Science 2019-05-28 Amin Salehi , Hasan Davulcu

We present a distributed randomized algorithm finding Minimum Spanning Tree (MST) of a given graph in O(1) rounds, with high probability, in the Congested Clique model. The input graph in the Congested Clique model is a graph of n nodes,…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-01 Tomasz Jurdzinski , Krzysztof Nowicki

Revealing hidden geometry and topology in noisy data sets is a challenging task. Elastic principal graph is a computationally efficient and flexible data approximator based on embedding a graph into the data space and minimizing the energy…

Data Structures and Algorithms · Computer Science 2019-09-25 A. N. Gorban , E. M. Mirkes , A. Zinovyev

Stacked denoising autoencoders (SDAs) have been successfully used to learn new representations for domain adaptation. Recently, they have attained record accuracy on standard benchmark tasks of sentiment analysis across different text…

Machine Learning · Computer Science 2012-06-22 Minmin Chen , Zhixiang Xu , Kilian Weinberger , Fei Sha

Multidimensional Scaling (MDS) is one of the most popular methods for dimensionality reduction and visualization of high dimensional data. Apart from these tasks, it also found applications in the field of geometry processing for the…

Computational Geometry · Computer Science 2017-09-12 Amit Boyarski , Alex M. Bronstein , Michael M. Bronstein

Geodesic distance serves as a reliable means of measuring distance in nonlinear spaces, and such nonlinear manifolds are prevalent in the current multimodal learning. In these scenarios, some samples may exhibit high similarity, yet they…

Computer Vision and Pattern Recognition · Computer Science 2025-05-19 Shibin Mei , Hang Wang , Bingbing Ni

Minimum spanning trees (MSTs) provide a convenient representation of datasets in numerous pattern recognition activities. Moreover, they are relatively fast to compute. In this paper, we quantify the extent to which they are meaningful in…

Machine Learning · Statistics 2025-10-16 Marek Gagolewski , Anna Cena , Maciej Bartoszuk , Łukasz Brzozowski

Node embeddings have become an ubiquitous technique for representing graph data in a low dimensional space. Graph autoencoders, as one of the widely adapted deep models, have been proposed to learn graph embeddings in an unsupervised way by…

Machine Learning · Computer Science 2019-08-13 Vaibhav , Po-Yao Huang , Robert Frederking

Visualization is a crucial step in exploratory data analysis. One possible approach is to train an autoencoder with low-dimensional latent space. Large network depth and width can help unfolding the data. However, such expressive networks…

Machine Learning · Computer Science 2023-07-03 Philipp Nazari , Sebastian Damrich , Fred A. Hamprecht

We propose a novel distance-based regularization method for deep metric learning called Multi-level Distance Regularization (MDR). MDR explicitly disturbs a learning procedure by regularizing pairwise distances between embedding vectors…

Computer Vision and Pattern Recognition · Computer Science 2021-02-09 Yonghyun Kim , Wonpyo Park

In this paper, we present a fully-dynamic distributed algorithm for maintaining a minimum spanning tree on general graphs with positive real edge weights. The goal of a dynamic MST algorithm is to update efficiently the minimum spanning…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Pradosh Kumar Mohapatra

Graph embeddings have emerged as a powerful tool for representing complex network structures in a low-dimensional space, enabling the use of efficient methods that employ the metric structure in the embedding space as a proxy for the…

Social and Information Networks · Computer Science 2024-04-18 Radosław Nowak , Adam Małkowski , Daniel Cieślak , Piotr Sokół , Paweł Wawrzyński

We propose a novel probabilistic dimensionality reduction framework that can naturally integrate the generative model and the locality information of data. Based on this framework, we present a new model, which is able to learn a smooth…

Machine Learning · Statistics 2016-10-18 Li Wang

Density-based distances (DBDs) provide a principled approach to metric learning by defining distances in terms of the underlying data distribution. By employing a Riemannian metric that increases in regions of low probability density,…

Machine Learning · Computer Science 2025-06-02 Peter Sorrenson , Daniel Behrend-Uriarte , Christoph Schnörr , Ullrich Köthe

Autoencoder reconstructions are widely used for the task of unsupervised anomaly localization. Indeed, an autoencoder trained on normal data is expected to only be able to reconstruct normal features of the data, allowing the segmentation…

Computer Vision and Pattern Recognition · Computer Science 2020-02-11 David Dehaene , Oriel Frigo , Sébastien Combrexelle , Pierre Eline