Related papers: Trees and cycles
We describe recurring patterns of numbers that survive each wave of the Sieve of Eratosthenes, including symmetries, uniform subdivisions, and quantifiable, predictive cycles that characterize their distribution across the number line. We…
The decycling number of a graph $G$ is the minimum number of vertices whose removal from $G$ results in an acyclic subgraph. It is known that determining the decycling number of a graph $G$ is equivalent to finding the maximum induced…
Much information about a graph can be obtained by studying its spanning trees. On the other hand, a graph can be regarded as a 1-dimensional cell complex, raising the question of developing a theory of trees in higher dimension. As observed…
This is a survey of the theory of real trees and their applications.
This is a short exposition--mostly by way of the toy models ``double logarithm'' and ``triple logarithm''--which should serve as an introduction to a forthcoming article in which we establish a connection between multiple polylogarithms,…
We present an algorithmic mapping from permutations of length dn to labeled n-node d-ary trees and back again. Given such a bijection, one can interpret each of the factorials in the formula for the Catalan numbers as a count of…
Traversals are commonly seen in tree data structures, and performance-enhancing transformations between tree traversals are critical for many applications. Existing approaches to reasoning about tree traversals and their transformations are…
We compute the number of equivalence classes of nonperiodic covering cycles of given length in a non oriented connected graph. A covering cycle is a closed path that traverses each edge of the graph at least once. A special case is the…
The $(n-\ell)$-deck of an $n$-vertex graph is the multiset of (unlabeled) subgraphs obtained from it by deleting $\ell$ vertices. An $n$-vertex graph is $\ell$-reconstructible if it is determined by its $(n-\ell)$-deck, meaning that no…
We extend classical results on simple varieties of trees (asymptotic enumeration, average behavior of tree parameters) to trees counted by their number of leaves. Motivated by genome comparison of related species, we then apply these…
If a graph has a non-singular adjacency matrix, then one may use the inverse matrix to define a (labeled) graph that may be considered to be the inverse graph to the original one. It has been known that an adjacency matrix of a tree is…
Just how many different connected shapes result from slicing a cube along some of its edges and unfolding it into the plane? In this article we answer this question by viewing the cube both as a surface and as a graph of vertices and edges.…
The reconstruction of large phylogenetic trees from data that violates clocklike evolution (or as a supertree constructed from any m input trees) raises a difficult question for biologists - how can one assign relative dates to the vertices…
We study the inertia of distance matrices of weighted graphs. Our novel congruence-based proof of the inertia of weighted trees extends to a proof for the inertia of weighted unicyclic graphs whose cycle is a triangle. Partial results are…
In this paper we consider two aspects of the inverse problem of how to construct merge trees realizing a given barcode. Much of our investigation exploits a recently discovered connection between the symmetric group and barcodes in general…
In this paper, we study tree--like tableaux and some of their probabilistic properties. Tree--like tableaux are in bijection with other combinatorial structures, including permutation tableaux, and have a connection to the partially…
Packing graphs is a combinatorial problem where several given graphs are being mapped into a common host graph such that every edge is used at most once. In the planar tree packing problem we are given two trees T1 and T2 on n vertices and…
The graph of overlapping permutations is a directed graph that is an analogue to the De Bruijn graph. It consists of vertices that are permutations of length $n$ and edges that are permutations of length $n+1$ in which an edge $a_1\cdots…
Reconstructing a parsimonious phylogenetic network that displays multiple phylogenetic trees is an important problem in theory of phylogenetics, where the complexity of the inferred networks is measured by reticulation numbers. The…
We investigate the typical cycle lengths, the total number of cycles, and the number of finite cycles in random permutations whose probability involves cycle weights. Typical cycle lengths and total number of cycles depend strongly on the…