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Graph embedding provides a feasible methodology to conduct pattern classification for graph-structured data by mapping each data into the vectorial space. Various pioneering works are essentially coding method that concentrates on a…

Machine Learning · Computer Science 2022-10-04 Xue Liu , Dan Sun , Xiaobo Cao , Hao Ye , Wei Wei

Emerging diseases present challenges in symptom recognition and timely clinical intervention due to limited available information. An effective prognostic model could assist physicians in making accurate diagnoses and designing personalized…

Machine Learning · Computer Science 2025-02-12 Zhongji Zhang , Yuhang Wang , Yinghao Zhu , Xinyu Ma , Yasha Wang , Junyi Gao , Liantao Ma , Wen Tang , Xiaoyun Zhang , Ling Wang

Epidemiology characterizes the influence of causes to disease and health conditions of defined populations. Cohort studies are population-based studies involving usually large numbers of randomly selected individuals and comprising numerous…

Computer Vision and Pattern Recognition · Computer Science 2015-01-19 Bernhard Preim , Paul Klemm , Helwig Hauser , Katrin Hegenscheid , Steffen Oeltze , Klaus Toennies , Henry Völzke

Genetic variants (GVs) are defined as differences in the DNA sequences among individuals and play a crucial role in diagnosing and treating genetic diseases. The rapid decrease in next generation sequencing cost has led to an exponential…

Machine Learning · Computer Science 2024-12-06 Zehui Li , Vallijah Subasri , Guy-Bart Stan , Yiren Zhao , Bo Wang

Retrieving gene functional networks from knowledge databases presents a challenge due to the mismatch between disease networks and subtype-specific variations. Current solutions, including statistical and deep learning methods, often fail…

Machine Learning · Computer Science 2025-02-25 Ziwei Yang , Zheng Chen , Xin Liu , Rikuto Kotoge , Peng Chen , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun

Existing work for plan trace visualization in automated planning uses pipeline-style visualizations, similar to plans in Gantt charts. Such visualization do not capture the domain structure or dependencies between the various fluents and…

Artificial Intelligence · Computer Science 2018-11-27 Sriram Gopalakrishnan , Subbarao Kambhampati

Representation learning provides new and powerful graph analytical approaches and tools for the highly valued data science challenge of mining knowledge graphs. Since previous graph analytical methods have mostly focused on homogeneous…

Information Retrieval · Computer Science 2019-05-29 Zheng Gao , Gang Fu , Chunping Ouyang , Satoshi Tsutsui , Xiaozhong Liu , Jeremy Yang , Christopher Gessner , Brian Foote , David Wild , Qi Yu , Ying Ding

Document structure analysis, such as zone segmentation and table recognition, is a complex problem in document processing and is an active area of research. The recent success of deep learning in solving various computer vision and machine…

Computer Vision and Pattern Recognition · Computer Science 2019-07-04 Shah Rukh Qasim , Hassan Mahmood , Faisal Shafait

There are hundreds of millions of tables in Web pages that contain useful information for many applications. Leveraging data within these tables is difficult because of the wide variety of structures, formats and data encoded in these…

Information Retrieval · Computer Science 2018-02-20 Majid Ghasemi-Gol , Pedro Szekely

Sequential recommendation aims at understanding user preference by capturing successive behavior correlations, which are usually represented as the item purchasing sequences based on their past interactions. Existing efforts generally…

Information Retrieval · Computer Science 2024-01-23 Yifang Qin , Wei Ju , Hongjun Wu , Xiao Luo , Ming Zhang

Data visualization techniques proffer efficient means to organize and present data in graphically appealing formats, which not only speeds up the process of decision making and pattern recognition but also enables decision-makers to fully…

Digital Libraries · Computer Science 2020-09-29 Shashwat Aggarwal , Ramesh Singh

Modern DNA sequencing technologies enable geneticists to rapidly identify genetic variation among many human genomes. However, isolating the minority of variants underlying disease remains an important, yet formidable challenge for medical…

Genomics · Quantitative Biology 2015-06-15 Uma Paila , Brad Chapman , Rory Kirchner , Aaron Quinlan

The promise of visualization recommendation systems is that analysts will be automatically provided with relevant and high-quality visualizations that will reduce the work of manual exploration or chart creation. However, little research to…

Human-Computer Interaction · Computer Science 2022-02-04 Calvin Bao , Siyao Li , Sarah Flores , Michael Correll , Leilani Battle

Brain-computer interface (BCI) is challenging to use in practice due to the inter/intra-subject variability of electroencephalography (EEG). The BCI system, in general, necessitates a calibration technique to obtain subject/session-specific…

Signal Processing · Electrical Eng. & Systems 2022-04-18 Serkan Musellim , Dong-Kyun Han , Ji-Hoon Jeong , Seong-Whan Lee

International initiatives such as METABRIC (Molecular Taxonomy of Breast Cancer International Consortium) have collected several multigenomic and clinical data sets to identify the undergoing molecular processes taking place throughout the…

Machine Learning · Computer Science 2022-11-29 Teodora Reu

Combining different modalities of data from human tissues has been critical in advancing biomedical research and personalised medical care. In this study, we leverage a graph embedding model (i.e VGAE) to perform link prediction on…

Genomics · Quantitative Biology 2021-07-27 Amine Amor , Pietro Lio' , Vikash Singh , Ramon Viñas Torné , Helena Andres Terre

Annotation scarcity has become a major obstacle for training powerful deep-learning models for medical image segmentation, restricting their deployment in clinical scenarios. To address it, semi-supervised learning by exploiting abundant…

Computer Vision and Pattern Recognition · Computer Science 2023-11-21 Qingjie Zeng , Yutong Xie , Zilin Lu , Mengkang Lu , Yicheng Wu , Yong Xia

There is a rising need for computational models that can complementarily leverage data of different modalities while investigating associations between subjects for population-based disease analysis. Despite the success of convolutional…

Image and Video Processing · Electrical Eng. & Systems 2020-09-08 Yongxiang Huang , Albert C. S. Chung

Rare diseases affecting 350 million individuals are commonly associated with delay in diagnosis or misdiagnosis. To improve those patients' outcome, rare disease detection is an important task for identifying patients with rare conditions…

Machine Learning · Computer Science 2019-07-03 Kezi Yu , Yunlong Wang , Yong Cai , Cao Xiao , Emily Zhao , Lucas Glass , Jimeng Sun

Documents are often used for knowledge sharing and preservation in business and science, within which are tables that capture most of the critical data. Unfortunately, most documents are stored and distributed as PDF or scanned images,…

Computer Vision and Pattern Recognition · Computer Science 2020-12-03 Xinyi Zheng , Doug Burdick , Lucian Popa , Xu Zhong , Nancy Xin Ru Wang