Related papers: Linear-Delay Enumeration for Minimal Steiner Probl…
Listing k-cliques plays a fundamental role in various data mining tasks, such as community detection and mining of cohesive substructures. Existing algorithms for the k-clique listing problem are built upon a general framework, which finds…
In this paper we study a natural generalization of both {\sc $k$-Path} and {\sc $k$-Tree} problems, namely, the {\sc Subgraph Isomorphism} problem. In the {\sc Subgraph Isomorphism} problem we are given two graphs $F$ and $G$ on $k$ and $n$…
In \cite{siebert2019linear} the authors present a set of integer programs (IPs) for the Steiner tree problem, which can be used for both, the directed and the undirected setting of the problem. Each IP finds an optimal Steiner tree with a…
The automaton constrained tree knapsack problem is a variant of the knapsack problem in which the items are associated with the vertices of the tree, and we can select a subset of items that is accepted by a top-down tree automaton. If the…
The independence number of a tree decomposition is the size of a largest independent set contained in a single bag. The tree-independence number of a graph $G$ is the minimum independence number of a tree decomposition of $G$. As shown…
Processing graphs with temporal information (the temporal graphs) has become increasingly important in the real world. In this paper, we study efficient solutions to temporal graph applications using new algorithms for Incremental Minimum…
We consider the $k$-prize-collecting Steiner tree problem. An instance is composed of an integer $k$ and a graph $G$ with costs on edges and penalties on vertices. The objective is to find a tree spanning at least $k$ vertices which…
Interval and proper interval graphs are very well-known graph classes, for which there is a wide literature. As a consequence, some generalizations of interval graphs have been proposed, in which graphs in general are expressed in terms of…
In the k-Connected Directed Steiner Tree problem (k-DST), we are given a directed graph G=(V, E) with edge (or vertex) costs, a root vertex r, a set of q terminals T, and a connectivity requirement k>0; the goal is to find a minimum-cost…
We consider Directed Steiner Forest (DSF), a fundamental problem in network design. The input to DSF is a directed edge-weighted graph $G = (V, E)$ and a collection of vertex pairs $\{(s_i, t_i)\}_{i \in [k]}$. The goal is to find a minimum…
Given an edge-weighted undirected graph and a list of k source-sink pairs of vertices, the well-known minimum multicut problem consists in selecting a minimum-weight set of edges whose removal leaves no path between every source and its…
A transversal of a hypergraph is a set of vertices intersecting each hyperedge. We design and analyze new exponential-time algorithms to enumerate all inclusion-minimal transversals of a hypergraph. For each fixed k>2, our algorithms for…
We introduce a graph partitioning problem motivated by computational topology and propose two algorithms that produce approximate solutions. Specifically, given a weighted, undirected graph $G$ and a positive integer $k$, we desire to find…
Graphs are extremely versatile and ubiquitous mathematical structures with potential to model a wide range of domains. For this reason, graph problems have been of interest since the early days of computer science. Some of these problems…
We study the problem of finding small trees. Classical network design problems are considered with the additional constraint that only a specified number $k$ of nodes are required to be connected in the solution. A prototypical example is…
Given an edge-weighted graph and a set of known seed vertices, a network scientist often desires to understand the graph relationships to explain connections between the seed vertices. When the seed set is 3 or larger Steiner minimal tree -…
Given a connected graph $G$ and a terminal set $R \subseteq V(G)$, {\em Steiner tree} asks for a tree that includes all of $R$ with at most $r$ edges for some integer $r \geq 0$. It is known from [ND12,Garey et. al \cite{steinernpc}] that…
In the last decade, subgraph detection and enumeration have emerged as a central problem in distributed graph algorithms. This is largely due to the theoretical challenges and practical applications of these problems. In this paper, we…
The problem of enumerating all connected induced subgraphs of a given order $k$ from a given graph arises in many practical applications: bioinformatics, information retrieval, processor design,to name a few. The upper bound on the number…
The Minimum Linear Arrangement problem (MLA) consists of finding a mapping $\pi$ from vertices of a graph to distinct integers that minimizes $\sum_{\{u,v\}\in E}|\pi(u) - \pi(v)|$. In that setting, vertices are often assumed to lie on a…