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Instance object segmentation and tracking provide comprehensive quantification of objects across microscope videos. The recent single-stage pixel-embedding based deep learning approach has shown its superior performance compared with…

Image and Video Processing · Electrical Eng. & Systems 2020-11-03 Quan Liu , Isabella M. Gaeta , Mengyang Zhao , Ruining Deng , Aadarsh Jha , Bryan A. Millis , Anita Mahadevan-Jansen , Matthew J. Tyska , Yuankai Huo

Deep learning-based models in medical imaging often struggle to generalize effectively to new scans due to data heterogeneity arising from differences in hardware, acquisition parameters, population, and artifacts. This limitation presents…

Image and Video Processing · Electrical Eng. & Systems 2023-08-09 Sebastian Nørgaard Llambias , Mads Nielsen , Mostafa Mehdipour Ghazi

This paper addresses the task of unsupervised video multi-object segmentation. Current approaches follow a two-stage paradigm: 1) detect object proposals using pre-trained Mask R-CNN, and 2) conduct generic feature matching for temporal…

Computer Vision and Pattern Recognition · Computer Science 2021-04-13 Tianfei Zhou , Jianwu Li , Xueyi Li , Ling Shao

Most state-of-the-art instance segmentation methods have to be trained on densely annotated images. While difficult in general, this requirement is especially daunting for biomedical images, where domain expertise is often required for…

Computer Vision and Pattern Recognition · Computer Science 2022-04-05 Adrian Wolny , Qin Yu , Constantin Pape , Anna Kreshuk

We propose a new approach to learn to segment multiple image objects without manual supervision. The method can extract objects form still images, but uses videos for supervision. While prior works have considered motion for segmentation, a…

Computer Vision and Pattern Recognition · Computer Science 2022-10-24 Laurynas Karazija , Subhabrata Choudhury , Iro Laina , Christian Rupprecht , Andrea Vedaldi

Unsupervised semantic segmentation aims to categorize each pixel in an image into a corresponding class without the use of annotated data. It is a widely researched area as obtaining labeled datasets is expensive. While previous works in…

Computer Vision and Pattern Recognition · Computer Science 2024-01-01 Yau Shing Jonathan Cheung , Xi Chen , Lihe Yang , Hengshuang Zhao

Weakly-supervised semantic segmentation under image tags supervision is a challenging task as it directly associates high-level semantic to low-level appearance. To bridge this gap, in this paper, we propose an iterative bottom-up and…

Computer Vision and Pattern Recognition · Computer Science 2018-06-13 Xiang Wang , Shaodi You , Xi Li , Huimin Ma

Digitization techniques for biomedical images yield different visual patterns in radiological exams. These differences may hamper the use of data-driven approaches for inference over these images, such as Deep Neural Networks. Another…

Computer Vision and Pattern Recognition · Computer Science 2019-12-10 Hugo Oliveira , Edemir Ferreira , Jefersson A. dos Santos

Recently, automated medical image segmentation methods based on deep learning have achieved great success. However, they heavily rely on large annotated datasets, which are costly and time-consuming to acquire. Few-shot learning aims to…

Artificial Intelligence · Computer Science 2024-08-20 Jiayu Huo , Ruiqiang Xiao , Haotian Zheng , Yang Liu , Sebastien Ourselin , Rachel Sparks

There has recently been great progress in automatic segmentation of medical images with deep learning algorithms. In most works observer variation is acknowledged to be a problem as it makes training data heterogeneous but so far no…

Computer Vision and Pattern Recognition · Computer Science 2020-01-24 Arkadiy Dushatskiy , Adriënne M. Mendrik , Peter A. N. Bosman , Tanja Alderliesten

Eye image segmentation is a critical step in eye tracking that has great influence over the final gaze estimate. Segmentation models trained using supervised machine learning can excel at this task, their effectiveness is determined by the…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Viet Dung Nguyen , Reynold Bailey , Gabriel J. Diaz , Chengyi Ma , Alexander Fix , Alexander Ororbia

The deep generative adversarial networks (GAN) recently have been shown to be promising for different computer vision applications, like image edit- ing, synthesizing high resolution images, generating videos, etc. These networks and the…

Computer Vision and Pattern Recognition · Computer Science 2018-04-18 Ali Diba , Vivek Sharma , Rainer Stiefelhagen , Luc Van Gool

Detecting and segmenting individual cells from microscopy images is critical to various life science applications. Traditional cell segmentation tools are often ill-suited for applications in brightfield microscopy due to poor contrast and…

Image and Video Processing · Electrical Eng. & Systems 2020-05-20 Rituparna Sarkar , Suvadip Mukherjee , Elisabeth Labruyère , Jean-Christophe Olivo-Marin

Unsupervised image segmentation is an important task in many real-world scenarios where labelled data is of scarce availability. In this paper we propose a novel approach that harnesses recent advances in unsupervised learning using a…

Computer Vision and Pattern Recognition · Computer Science 2022-10-24 Moshe Eliasof , Nir Ben Zikri , Eran Treister

We present a weakly supervised deep learning method to perform instance segmentation of cells present in microscopy images. Annotation of biomedical images in the lab can be scarce, incomplete, and inaccurate. This is of concern when…

Computer Vision and Pattern Recognition · Computer Science 2019-08-28 Fidel A. Guerrero-Peña , Pedro D. Marrero Fernandez , Tsang Ing Ren , Alexandre Cunha

Modern optical microscopes are fully motorised; however, transforming them into truly smart systems requires real-time adjustment of acquisition settings in response to detected objects and dynamic biological events. At the core are…

Medical image segmentation is a fundamental and critical step in many image-guided clinical approaches. Recent success of deep learning-based segmentation methods usually relies on a large amount of labeled data, which is particularly…

Computer Vision and Pattern Recognition · Computer Science 2023-11-15 Rushi Jiao , Yichi Zhang , Le Ding , Rong Cai , Jicong Zhang

Unsupervised panoptic segmentation aims to partition an image into semantically meaningful regions and distinct object instances without training on manually annotated data. In contrast to prior work on unsupervised panoptic scene…

Computer Vision and Pattern Recognition · Computer Science 2025-11-12 Oliver Hahn , Christoph Reich , Nikita Araslanov , Daniel Cremers , Christian Rupprecht , Stefan Roth

In medical imaging, the heterogeneity of multi-centre data impedes the applicability of deep learning-based methods and results in significant performance degradation when applying models in an unseen data domain, e.g. a new centreor a new…

Computer Vision and Pattern Recognition · Computer Science 2020-08-12 Hongwei Li , Timo Loehr , Anjany Sekuboyina , Jianguo Zhang , Benedikt Wiestler , Bjoern Menze

The goal of self-supervised visual representation learning is to learn strong, transferable image representations, with the majority of research focusing on object or scene level. On the other hand, representation learning at part level has…

Computer Vision and Pattern Recognition · Computer Science 2022-03-22 Subhabrata Choudhury , Iro Laina , Christian Rupprecht , Andrea Vedaldi