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The simulation of the physical movement of multi-body systems at an atomistic level, with forces calculated from a quantum mechanical description of the electrons, motivates a graph partitioning problem studied in this article. Several…

This paper presents a new approach to the solution of Probabilistic Risk Assessment (PRA) models using the combination of Reinforcement Learning (RL) and Graph Neural Networks (GNNs). The paper introduces and demonstrates the concept using…

Systems and Control · Electrical Eng. & Systems 2024-02-29 Joachim Grimstad , Andrey Morozov

We present the angular distribution of gamma rays produced by proton-proton interactions in parameterized formulae to facilitate calculations in astrophysical environments. The parameterization is derived from Monte Carlo simulations of the…

Astrophysics · Physics 2009-11-13 Niklas Karlsson , Tuneyoshi Kamae

Graph theory provides fundamental concepts for many fields of science like statistical physics, network analysis and theoretical computer science. Here we give a pedagogical introduction to graph theory, divided into three sections. In the…

Disordered Systems and Neural Networks · Physics 2007-05-23 Alexander K. Hartmann , Martin Weigt

Graphs are an essential part of many machine learning problems such as analysis of parse trees, social networks, knowledge graphs, transportation systems, and molecular structures. Applying machine learning in these areas typically involves…

Artificial Intelligence · Computer Science 2019-07-16 Mehdi Ben Lazreg , Morten Goodwin , Ole-Christoffer Granmo

Hierarchical models are a powerful tool for high-throughput data with a small to moderate number of replicates, as they allow sharing information across units of information, for example, genes. We propose two such models and show its…

Applications · Statistics 2009-10-09 David Rossell

The increasing complexity of the software/hardware stack of modern supercomputers results in explosion of parameters. The performance analysis becomes a truly experimental science, even more challenging in the presence of massive…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-07-27 Jesun Sahariar Firoz , Thejaka Amila Kanewala , Marcin Zalewski , Martina Barnas , Andrew Lumsdaine

The optimized $\delta$-expansion is a nonperturbative approach for field theoretic models which combines the techniques of perturbation theory and the variational principle. This technique is discussed in the $\lambda \phi^4$ model and then…

Nuclear Theory · Physics 2009-10-30 G. Krein , R. S. Marques de Carvalho , D. P. Menezes , M. Nielsen , M. B. Pinto

Based on the thermodynamic perturbation theory (TPT) and the Random phase approximation (RPA), we present a statistical theory of solutions of electrically neutral soft molecules, every of which is modelled as a set of sites that interact…

Soft Condensed Matter · Physics 2019-03-12 Yu. A. Budkov

Graph transformer networks (GTN) are a variant of graph convolutional networks (GCN) that are targeted to heterogeneous graphs in which nodes and edges have associated type information that can be exploited to improve inference accuracy.…

Artificial Intelligence · Computer Science 2021-06-17 Loc Hoang , Udit Agarwal , Gurbinder Gill , Roshan Dathathri , Abhik Seal , Brian Martin , Keshav Pingali

Dosimetry cross sections are fundamental quantities essential in determination of neutron fluences in points of interest in technologies under heavy radiation load. The most common is their application to Reactor Pressure Vessel aging…

The recent development of high-throughput sequencing creates a large collection of multi-omics data, which enables researchers to better investigate cancer molecular profiles and cancer taxonomy based on molecular subtypes. Integrating…

Genomics · Quantitative Biology 2024-01-25 Bingjun Li , Sheida Nabavi

While graph-derived signals are widely used in tabular learning, existing studies typically rely on limited experimental setups and average performance comparisons, leaving the statistical reliability and robustness of observed gains…

Artificial Intelligence · Computer Science 2026-03-17 Mario Heidrich , Jeffrey Heidemann , Rüdiger Buchkremer , Gonzalo Wandosell Fernández de Bobadilla

In recent years, graph neural networks (GNNs) have gained increasing popularity and have shown very promising results for data that are represented by graphs. The majority of GNN architectures are designed based on developing new…

Machine Learning · Statistics 2021-10-05 Anahita Iravanizad , Edgar Ivan Sanchez Medina , Martin Stoll

Mapper, a topological algorithm, is frequently used as an exploratory tool to build a graphical representation of data. This representation can help to gain a better understanding of the intrinsic shape of high-dimensional genomic data and…

Genomics · Quantitative Biology 2023-07-19 Erik J. Amézquita , Farzana Nasrin , Kathleen M. Storey , Masato Yoshizawa

A graph-based sampling and consensus (GraphSAC) approach is introduced to effectively detect anomalous nodes in large-scale graphs. Existing approaches rely on connectivity and attributes of all nodes to assign an anomaly score per node.…

Machine Learning · Computer Science 2019-10-23 Vassilis N. Ioannidis , Dimitris Berberidis , Georgios B. Giannakis

We present Graph Neural Diffusion (GRAND) that approaches deep learning on graphs as a continuous diffusion process and treats Graph Neural Networks (GNNs) as discretisations of an underlying PDE. In our model, the layer structure and…

Learning the underlying distribution of molecular graphs and generating high-fidelity samples is a fundamental research problem in drug discovery and material science. However, accurately modeling distribution and rapidly generating novel…

Machine Learning · Computer Science 2023-05-24 Han Huang , Leilei Sun , Bowen Du , Weifeng Lv

Standard diffusion models are flexible estimators of complex distributions, but they do not encode causal structures and therefore do not by themselves support causal analysis. We propose a causality-encoded diffusion framework that…

Methodology · Statistics 2026-04-24 Li Chen , Xiaotong Shen , Wei Pan

Many real-world IoT systems, which include a variety of internet-connected sensory devices, produce substantial amounts of multivariate time series data. Meanwhile, vital IoT infrastructures like smart power grids and water distribution…

Machine Learning · Computer Science 2022-01-19 Zekai Chen , Dingshuo Chen , Xiao Zhang , Zixuan Yuan , Xiuzhen Cheng