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A perturbative method is developed for calculating the effects of recurrent synaptic interactions between neurons embedded in a network. A series expansion is constructed that converges for networks with noisy membrane potential and weak…

Disordered Systems and Neural Networks · Physics 2009-11-10 Patrick D. Roberts

A central goal of neuroscience is to understand the representations formed by brain activity patterns and their connection to behavior. The classical approach is to investigate how individual neurons encode the stimuli and how their tuning…

Neurons and Cognition · Quantitative Biology 2021-04-21 Nikolaus Kriegeskorte , Xue-Xin Wei

To understand the behavior of a neural circuit it is a presupposition that we have a model of the dynamical system describing this circuit. This model is determined by several parameters, including not only the synaptic weights, but also…

Neural and Evolutionary Computing · Computer Science 2016-08-23 J. Fischer , P. Manoonpong , S. Lackner

Metabolism is a fascinating cell machinery underlying life and disease and genome-scale reconstructions provide us with a captivating view of its complexity. However, deciphering the relationship between metabolic structure and function…

Molecular Networks · Quantitative Biology 2011-09-12 M. Angeles Serrano , Marian Boguna , Francesc Sagues

Large scale neural recordings have established that the transformation of sensory stimuli into motor outputs relies on low-dimensional dynamics at the population level, while individual neurons exhibit complex selectivity. Understanding how…

Neurons and Cognition · Quantitative Biology 2018-08-29 Francesca Mastrogiuseppe , Srdjan Ostojic

We study the expressivity of sparse maxout networks, where each neuron takes a fixed number of inputs from the previous layer and employs a, possibly multi-argument, maxout activation. This setting captures key characteristics of…

Machine Learning · Computer Science 2025-10-17 Moritz Grillo , Tobias Hofmann

To understand the structure and organization of a large-scale social, biological or technological network, it can be helpful to describe and extract local communities or modules of the network. In this article, we develop a neurodynamic…

Social and Information Networks · Computer Science 2015-12-01 Shihua Zhang , Guanghua Hu , Wenwen Min

The characterization of dynamical processes in living systems provides important clues for their mechanistic interpretation and link to biological functions. Thanks to recent advances in microscopy techniques, it is now possible to…

Data Analysis, Statistics and Probability · Physics 2023-11-29 Jesús Pineda , Benjamin Midtvedt , Harshith Bachimanchi , Sergio Noé , Daniel Midtvedt , Giovanni Volpe , Carlo Manzo

This work explores hypernetworks: an approach of using a one network, also known as a hypernetwork, to generate the weights for another network. Hypernetworks provide an abstraction that is similar to what is found in nature: the…

Machine Learning · Computer Science 2016-12-02 David Ha , Andrew Dai , Quoc V. Le

Dynamics and function of neuronal networks are determined by their synaptic connectivity. Current experimental methods to analyze synaptic network structure on the cellular level, however, cover only small fractions of functional neuronal…

Neurons and Cognition · Quantitative Biology 2015-07-28 Yury V. Zaytsev , Abigail Morrison , Moritz Deger

Neuroscientists are actively pursuing high-precision maps, or graphs, consisting of networks of neurons and connecting synapses in mammalian and non-mammalian brains. Such graphs, when coupled with physiological and behavioral data, are…

Transformers have emerged as the state of the art neural network architecture for natural language processing and computer vision. In the foundation model paradigm, large transformer models (BERT, GPT3/4, Bloom, ViT) are pre-trained on…

Machine Learning · Computer Science 2023-09-06 Guruprasad Raghavan , Bahey Tharwat , Surya Narayanan Hari , Dhruvil Satani , Matt Thomson

This article discusses how the individual morphological properties of basic objects (e.g. neurons, molecules and aggregates), jointly with their particular spatial distribution, can determine the connectivity and dynamics of systems…

Molecular Networks · Quantitative Biology 2007-05-23 Luciano da Fontoura Costa

We introduce Resonant Sparse Geometry Networks (RSGN), a brain-inspired architecture with self-organizing sparse hierarchical input-dependent connectivity. Unlike Transformer architectures that employ dense attention mechanisms with O(n^2)…

Machine Learning · Computer Science 2026-01-27 Hasi Hays

The fundamental laws of physics are intrinsically geometric, dictating the evolution of systems through principles of symmetry and conservation. While modern machine learning offers powerful tools for modeling complex dynamics from data,…

Machine Learning · Computer Science 2025-07-22 Amine Mohamed Aboussalah , Abdessalam Ed-dib

Neural networks efficiently encode learned information within their parameters. Consequently, many tasks can be unified by treating neural networks themselves as input data. When doing so, recent studies demonstrated the importance of…

Machine Learning · Computer Science 2024-01-02 Derek Lim , Haggai Maron , Marc T. Law , Jonathan Lorraine , James Lucas

Understanding how network function constrains neural connectivity is a central challenge in neuroscience. An influential approach is to train neural networks with gradient descent on cognitive tasks and characterize the resulting…

Neurons and Cognition · Quantitative Biology 2026-05-26 Ludwig Hruza , Srdjan Ostojic

We develop a statistical mechanical approach based on the replica method to study the design space of deep and wide neural networks constrained to meet a large number of training data. Specifically, we analyze the configuration space of the…

Disordered Systems and Neural Networks · Physics 2020-04-17 Hajime Yoshino

We introduce Network Automata, a framework which couples the topological evolution of a network to its structure. It is useful for dealing with networks in which the topology evolves according to some specified microscopic rules and,…

Physics and Society · Physics 2011-07-12 David M. D. Smith , Jukka-Pekka Onnela , Chiu Fan Lee , Mark Fricker , Neil F. Johnson

The learnability of different neural architectures can be characterized directly by computable measures of data complexity. In this paper, we reframe the problem of architecture selection as understanding how data determines the most…

Machine Learning · Computer Science 2018-02-14 William H. Guss , Ruslan Salakhutdinov