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We present COVID-SEE, a system for medical literature discovery based on the concept of information exploration, which builds on several distinct text analysis and natural language processing methods to structure and organise information in…

The current COVID-19 pandemic is a serious threat to humanity that directly affects the lungs. Automatic identification of COVID-19 is a challenge for health care officials. The standard gold method for diagnosing COVID-19 is Reverse…

Image and Video Processing · Electrical Eng. & Systems 2022-08-09 Briskline Kiruba S , Petchiammal A , D. Murugan

COVID-19 has adversely affected humans and societies in different aspects. Numerous people have perished due to inaccurate COVID-19 identification and, consequently, a lack of appropriate medical treatment. Numerous solutions based on…

Image and Video Processing · Electrical Eng. & Systems 2023-09-06 AmirReza BabaAhmadi , Sahar Khalafi , Masoud ShariatPanahi , Moosa Ayati

Objective: Social media-based public health research is crucial for epidemic surveillance, but most studies identify relevant corpora with keyword-matching. This study develops a system to streamline the process of curating colloquial…

Computation and Language · Computer Science 2024-03-19 Yining Hua , Jiageng Wu , Shixu Lin , Minghui Li , Yujie Zhang , Dinah Foer , Siwen Wang , Peilin Zhou , Jie Yang , Li Zhou

Large Language Models (LLMs) have greatly advanced knowledge graph question answering (KGQA), yet existing systems are typically optimized for returning highly relevant but predictable answers. A missing yet desired capacity is to exploit…

Computation and Language · Computer Science 2025-11-18 Mengying Wang , Chenhui Ma , Ao Jiao , Tuo Liang , Pengjun Lu , Shrinidhi Hegde , Yu Yin , Evren Gurkan-Cavusoglu , Yinghui Wu

Coronavirus disease 2019 (COVID-19) is an ongoing global pandemic in over 200 countries and territories, which has resulted in a great public health concern across the international community. Analysis of X-ray imaging data can play a…

Image and Video Processing · Electrical Eng. & Systems 2021-04-02 Lucy Nwosu , Xiangfang Li , Lijun Qian , Seungchan Kim , Xishuang Dong

Knowledge graphs and large language models (LLMs) are key tools for biomedical knowledge integration and reasoning, facilitating structured organization of scientific articles and discovery of complex semantic relationships. However,…

Computation and Language · Computer Science 2025-04-01 Yichun Feng , Jiawei Wang , Ruikun He , Lu Zhou , Yixue Li

The pandemic of COVID-19 has inspired extensive works across different research fields. Existing literature and knowledge platforms on COVID-19 only focus on collecting papers on biology and medicine, neglecting the interdisciplinary…

Information Retrieval · Computer Science 2023-04-17 Cheng Deng , Jiaxin Ding , Luoyi Fu , Weinan Zhang , Xinbing Wang , Chenghu Zhou

The global pandemic due to emergence of COVID 19 has created the unrivaled public health crisis. It has huge morbidity rate never comprehended in the recent decades. Researchers have made many efforts to find the optimal solution of this…

Quantitative Methods · Quantitative Biology 2024-09-26 Imra Aqeel

Drug discovery is a critical task in biomedical natural language processing (NLP), yet explainable drug discovery remains underexplored. Meanwhile, large language models (LLMs) have shown remarkable abilities in natural language…

Computation and Language · Computer Science 2025-02-28 Kai Zhang , Rui Zhu , Shutian Ma , Jingwei Xiong , Yejin Kim , Fabricio Murai , Xiaozhong Liu

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

The main purpose of this study is to develop a pipeline for COVID-19 detection from a big and challenging database of Computed Tomography (CT) images. The proposed pipeline includes a segmentation part, a lung extraction part, and a…

Image and Video Processing · Electrical Eng. & Systems 2024-07-08 Kenan Morani

The 2019 coronavirus disease (COVID-19) became a worldwide pandemic with currently no effective antiviral drug except treatments for symptomatic therapy. Flux balance analysis is an efficient method to analyze metabolic networks. It allows…

Molecular Networks · Quantitative Biology 2021-11-12 Ali Kishk , Maria Pires Pacheco , Thomas Sauter

Under the global pandemic of COVID-19, the use of artificial intelligence to analyze chest X-ray (CXR) image for COVID-19 diagnosis and patient triage is becoming important. Unfortunately, due to the emergent nature of the COVID-19…

Image and Video Processing · Electrical Eng. & Systems 2020-05-06 Yujin Oh , Sangjoon Park , Jong Chul Ye

We investigate the potential benefit of incorporating dictionary information into a neural network architecture for natural language processing. In particular, we make use of this architecture to extract several concepts related to COVID-19…

Computation and Language · Computer Science 2023-09-06 Abul Hasan , Mark Levene , David Weston

Large language models (LLMs) have recently emerged as powerful tools, finding many medical applications. LLMs' ability to coalesce vast amounts of information from many sources to generate a response-a process similar to that of a human…

In Natural Language Processing (NLP), Machine Reading Comprehension (MRC) is the task of answering a question based on a given context. To handle questions in the medical domain, modern language models such as BioBERT, SciBERT and even…

Computation and Language · Computer Science 2024-12-16 Saptarshi Sengupta , Connor Heaton , Suhan Cui , Soumalya Sarkar , Prasenjit Mitra

The Coronavirus Disease 2019 (COVID-19) pandemic has infected over 10 million people globally with a relatively high mortality rate. There are many therapeutics undergoing clinical trials, but there is no effective vaccine or therapy for…

Molecular Networks · Quantitative Biology 2020-07-01 Fuhai Li , Andrew P. Michelson , Randi Foraker , Ming Zhan , Philip R. O. Payne

Due to their excellent drug-like and pharmacokinetic properties, small molecule drugs are widely used to treat various diseases, making them a critical component of drug discovery. In recent years, with the rapid development of deep…

Machine Learning · Computer Science 2025-05-15 Kun Li , Yida Xiong , Hongzhi Zhang , Xiantao Cai , Jia Wu , Bo Du , Wenbin Hu