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Ion transport through narrow channels is described by the coupled Poisson--Nernst--Planck--Stokes equations (PNPS) on a continuum scale. However, direct numerical simulations in two or three dimensions of boundary value problems for small…
Characterizing the local voltage distribution within nanophysiological domains, driven by ionic currents through membrane channels, is crucial for studying cellular activity in modern biophysics, yet it presents significant experimental and…
We introduce a neural-preconditioned iterative solver for Poisson equations with mixed boundary conditions. Typical Poisson discretizations yield large, ill-conditioned linear systems. Iterative solvers can be effective for these problems,…
Effective Poisson-Nernst-Planck (PNP) equations are derived for macroscopic ion transport in charged porous media under periodic fluid flow by an asymptotic multi-scale expansion with drift. The microscopic setting is a two-component…
The Poisson-Nernst-Planck system of equations used to model ionic transport is interpreted as a gradient flow for the Wasserstein distance and a free energy in the space of probability measures with finite second moment. A variational…
We study a system of nonlinear partial differential equations modeling the electrokinetics of a nematic electrolyte material consisting of various ion species suspended in a nematic liquid crystal within a bounded domain in two or three…
In this paper, we investigate an optimal boundary control problem for a two dimensional simplified Ericksen--Leslie system modelling the incompressible nematic liquid crystal flows. The hydrodynamic system consists of the Navier--Stokes…
We use a diffuse interface method for solving Poisson's equation with a Dirichlet condition on an embedded curved interface. The resulting diffuse interface problem is identified as a standard Dirichlet problem on approximating regular…
In this paper, we introduce a new approach based on distance fields to exactly impose boundary conditions in physics-informed deep neural networks. The challenges in satisfying Dirichlet boundary conditions in meshfree and particle methods…
We prove existence of global weak solutions for the Nernst-Planck-Poisson problem which describes the evolution of concentrations of charged species $X_1, ..., X_P$ subject to Fickian diffusion and chemical reactions in the presence of an…
A system modeling the electrophoretic motion of a charged rigid macromolecule immersed in a incompressible ionized fluid is considered. The ionic concentration is governing by the Nernst-Planck equation coupled with the Poisson equation for…
We present a 3D finite element solver for the nonlinear Poisson-Nernst-Planck (PNP) equations for electrodiffusion, coupled to the Stokes system of fluid dynamics. The model serves as a building block for the simulation of macromolecule…
The purpose of this paper is the mathematical analysis of the weak solution of the mixed Dirichlet-Robin boundary value problem for the nonlinear Darcy-Forchheimer- Brinkman system in a bounded, two-dimensional Lipschitz domain, and the…
We present a new finite element method, called $\phi$-FEM, to solve numerically elliptic partial differential equations with natural (Neumann or Robin) boundary conditions using simple computational grids, not fitted to the boundary of the…
The diffuse-domain, or smoothed boundary, method is an attractive approach for solving partial differential equations in complex geometries because of its simplicity and flexibility. In this method the complex geometry is embedded into a…
Numerical resolution of exterior Helmholtz problems requires some approach to domain truncation. As an alternative to approximate nonreflecting boundary conditions and invocation of the Dirichlet-to-Neumann map, we introduce a new, nonlocal…
We apply the method of penalization to the Dirichlet problem for the Navier-Stokes-Fourier system governing the motion of a general viscous compressible fluid confined to a bounded Lipschitz domain. The physical domain is embedded into a…
The computation of the Dirichlet-Neumann operator for the Laplace equation is the primary challenge for the numerical simulation of the ideal fluid equations. The techniques used commonly for 2D fluids, such as conformal mapping and…
We study the expanded mixed finite element method applied to degenerate parabolic equations with the Dirichlet boundary condition. The equation is considered a prototype of the nonlinear Forchheimer equation, a inverted to the nonlinear…
We study a 1D geometry of a plasma confined between two conducting floating walls with applications to laboratory plasmas. These plasmas are characterized by a quasi-neutral bulk that is joined to the wall by a thin boundary layer called…