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Recent research trends in computational biology have increasingly focused on integrating text and bio-entity modeling, especially in the context of molecules and proteins. However, previous efforts like BioT5 faced challenges in…

Quantitative Methods · Quantitative Biology 2024-06-03 Qizhi Pei , Lijun Wu , Kaiyuan Gao , Xiaozhuan Liang , Yin Fang , Jinhua Zhu , Shufang Xie , Tao Qin , Rui Yan

Critical goals of scientific computing are to increase scientific rigor, reproducibility, and transparency while keeping up with ever-increasing computational demands. This work presents an integrated framework well-suited for data…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-10-13 Paul Nuyujukian

In multiple target tracking, it is important to be able to evaluate the performance of different tracking algorithms. The trajectory generalized optimal sub-pattern assignment metric (TGOSPA) is a recently proposed metric for such…

Optimization and Control · Mathematics 2025-05-23 Viktor Nevelius Wernholm , Alfred Wärnsäter , Axel Ringh

This paper leverages the recently introduced concept of algorithm footprints to investigate the interplay between algorithm configurations and problem characteristics. Performance footprints are calculated for six modular variants of the…

Neural and Evolutionary Computing · Computer Science 2025-07-04 Ana Nikolikj , Mario Andrés Muñoz , Eva Tuba , Tome Eftimov

This paper presents a generalization of the trajectory general optimal sub-pattern assignment (GOSPA) metric for evaluating multi-object tracking algorithms that provide trajectory estimates with track-level uncertainties. This metric…

Signal Processing · Electrical Eng. & Systems 2025-06-19 Yuxuan Xia , Ángel F. García-Fernández , Johan Karlsson , Yu Ge , Lennart Svensson , Ting Yuan

MATLAB has emerged as one of the languages most commonly used by scientists and engineers for technical computing, with ~1,000,000 users worldwide. The compute intensive nature of technical computing means that many MATLAB users have codes…

Astrophysics · Physics 2015-05-26 Nadya Bliss , Jeremy Kepner

In this paper, we propose a metric on the space of finite sets of trajectories for assessing multi-target tracking algorithms in a mathematically sound way. The main use of the metric is to compare estimates of trajectories from different…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Ángel F. García-Fernández , Abu Sajana Rahmathullah , Lennart Svensson

Recent advances in computing hardware and modeling software have given rise to new applications for numerical optimization. These new applications occasionally uncover bottlenecks in existing optimization algorithms and necessitate further…

Mathematical Software · Computer Science 2024-10-18 Anugrah Jo Joshy , John T. Hwang

We present Porthos, the first tool that discovers porting bugs in performance-critical code. Porthos takes as input a program and the memory models of the source architecture for which the program has been developed and the target model to…

Programming Languages · Computer Science 2017-05-01 Hernán Ponce-de-León , Florian Furbach , Keijo Heljanko , Roland Meyer

Pareto optimization via evolutionary multi-objective algorithms has been shown to efficiently solve constrained monotone submodular functions. Traditionally when solving multiple problems, the algorithm is run for each problem separately.…

Neural and Evolutionary Computing · Computer Science 2026-04-17 Liam Wigney , Frank Neumann

In this paper, the preliminary design of a space mission is approached introducing uncertainties on the design parameters and formulating the resulting reliable design problem as a multiobjective optimization problem. Uncertainties are…

Computational Engineering, Finance, and Science · Computer Science 2015-06-05 Massimiliano Vasile

Efficient robotic extraterrestrial exploration requires robots with diverse capabilities, ranging from scientific measurement tools to advanced locomotion. A robotic team enables the distribution of tasks over multiple specialized…

Robotics · Computer Science 2026-04-02 Matthias Rubio , Julia Richter , Hendrik Kolvenbach , Marco Hutter

The accelerated pace of space exploration and satellite connectivity calls for scalable communication network architectures that can effectively cater for increasing numbers of bursty flows, such as those occurring in remote monitoring and…

Networking and Internet Architecture · Computer Science 2024-09-24 Elif Uysal

The Unmanned Aerial Vehicle (UAV) path planning problem is a complex optimization problem in the field of robotics. In this paper, we investigate the possible utilization of this problem in benchmarking global optimization methods. We…

Neural and Evolutionary Computing · Computer Science 2025-01-27 Mhd Ali Shehadeh , Jakub Kudela

Recent advances in large language models (LLMs) have fueled growing interest in automating geospatial analysis and GIS workflows, yet their actual capabilities remain uncertain. In this work, we call for rigorous evaluation of LLMs on…

Software Engineering · Computer Science 2025-09-09 Qianheng Zhang , Song Gao , Chen Wei , Yibo Zhao , Ying Nie , Ziru Chen , Shijie Chen , Yu Su , Huan Sun

LLMs have been extensively used for the task of automated code generation. In this work, we examine the applicability of LLMs for the related but relatively unexplored task of code-equivalence checking, i.e., given two programs, whether…

Software Engineering · Computer Science 2025-06-05 Neeva Oza , Ishaan Govil , Parul Gupta , Dinesh Khandelwal , Dinesh Garg , Parag Singla

The travelling salesman problem (TSP) of space trajectory design is complicated by its complex structure design space. The graph based tree search and stochastic seeding combinatorial approaches are commonly employed to tackle the…

Optimization and Control · Mathematics 2021-09-07 Liqiang Hou , Shufan Wu , Zhongcheng Mu , Meilin Liu

Asynchronous Many-Task (AMT) runtimes offer a productive alternative to the Message Passing Interface (MPI). However, the diverse AMT landscape makes fair comparisons challenging. Task Bench, proposed by Slaughter et al., addresses this…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-03-16 Torben R. Lahnor , Mia Reitz , Jonas Posner , Patrick Diehl

In this paper, we propose the frameworks of generalized performance evaluation and generalized controller synthesis. To this end, we give a true concurrent process calculus as the model of systems, and present a lattice-valued performance…

Logic in Computer Science · Computer Science 2026-05-19 Zining Cao

A benchmark for multi-UAV task assignment is presented in order to evaluate different algorithms. An extended Team Orienteering Problem is modeled for a kind of multi-UAV task assignment problem. Three intelligent algorithms, i.e., Genetic…

Artificial Intelligence · Computer Science 2020-09-02 Kun Xiao , Junqi Lu , Ying Nie , Lan Ma , Xiangke Wang , Guohui Wang
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