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While Graph Neural Networks (GNNs) excel on graph-structured data, their performance is fundamentally limited by the quality of the observed graph, which often contains noise, missing links, or structural properties misaligned with GNNs'…

Machine Learning · Computer Science 2026-01-14 Hao Deng , Bo Liu

Graph learning problems are typically approached by focusing on learning the topology of a single graph when signals from all nodes are available. However, many contemporary setups involve multiple related networks and, moreover, it is…

Signal Processing · Electrical Eng. & Systems 2022-12-06 Samuel Rey , Madeline Navarro , Andrei Buciulea , Santiago Segarra , Antonio G. Marques

Graph serves as a powerful tool for modeling data that has an underlying structure in non-Euclidean space, by encoding relations as edges and entities as nodes. Despite developments in learning from graph-structured data over the years, one…

Machine Learning · Computer Science 2022-12-20 Tianxiang Zhao , Dongsheng Luo , Xiang Zhang , Suhang Wang

The information bottleneck principle provides an information-theoretic method for representation learning, by training an encoder to retain all information which is relevant for predicting the label while minimizing the amount of other,…

Machine Learning · Computer Science 2020-02-19 Marco Federici , Anjan Dutta , Patrick Forré , Nate Kushman , Zeynep Akata

Integration of data from multiple omics techniques is becoming increasingly important in biomedical research. Due to non-uniformity and technical limitations in omics platforms, such integrative analyses on multiple omics, which we refer to…

Machine Learning · Computer Science 2021-02-11 Changhee Lee , Mihaela van der Schaar

The Information Bottleneck (IB) method (\cite{tishby2000information}) provides an insightful and principled approach for balancing compression and prediction for representation learning. The IB objective $I(X;Z)-\beta I(Y;Z)$ employs a…

Machine Learning · Computer Science 2019-10-23 Tailin Wu , Ian Fischer , Isaac L. Chuang , Max Tegmark

Under circumstances of heterophily, where nodes with different labels tend to be connected based on semantic meanings, Graph Neural Networks (GNNs) often exhibit suboptimal performance. Current studies on graph heterophily mainly focus on…

Machine Learning · Computer Science 2024-11-13 Yilun Zheng , Jiahao Xu , Lihui Chen

Information Bottleneck (IB) based multi-view learning provides an information theoretic principle for seeking shared information contained in heterogeneous data descriptions. However, its great success is generally attributed to estimate…

Computer Vision and Pattern Recognition · Computer Science 2022-06-22 Xudong Tian , Zhizhong Zhang , Cong Wang , Wensheng Zhang , Yanyun Qu , Lizhuang Ma , Zongze Wu , Yuan Xie , Dacheng Tao

Despite Graph neural networks' significant performance gain over many classic techniques in various graph-related downstream tasks, their successes are restricted in shallow models due to over-smoothness and the difficulties of…

Machine Learning · Computer Science 2023-12-15 Jin Li , Qirong Zhang , Shuling Xu , Xinlong Chen , Longkun Guo , Yang-Geng Fu

A wide range of graph learning tasks, such as structure discovery, temporal graph analysis, and combinatorial optimization, focus on inferring graph structures from data, rather than making predictions on given graphs. However, the…

Graph coarsening is a widely used dimensionality reduction technique for approaching large-scale graph machine learning problems. Given a large graph, graph coarsening aims to learn a smaller-tractable graph while preserving the properties…

Machine Learning · Statistics 2022-10-04 Manoj Kumar , Anurag Sharma , Sandeep Kumar

Implicit Graph Neural Networks (GNNs) have achieved significant success in addressing graph learning problems recently. However, poorly designed implicit GNN layers may have limited adaptability to learn graph metrics, experience…

Machine Learning · Computer Science 2024-02-16 Guoji Fu , Mohammed Haroon Dupty , Yanfei Dong , Lee Wee Sun

Graph anomaly detection (GAD) aims to identify anomalous graphs that significantly deviate from other ones, which has raised growing attention due to the broad existence and complexity of graph-structured data in many real-world scenarios.…

Machine Learning · Computer Science 2024-02-21 Jinyu Cai , Yunhe Zhang , Zhoumin Lu , Wenzhong Guo , See-kiong Ng

Graph Neural Networks (GNNs) have demonstrated significant success in learning from graph-structured data across various domains. Despite their great successful, one critical challenge is often overlooked by existing works, i.e., the…

Machine Learning · Computer Science 2024-02-15 Tianxiang Zhao , Xiang Zhang , Suhang Wang

The training dynamics of hidden layers in deep learning are poorly understood in theory. Recently, the Information Plane (IP) was proposed to analyze them, which is based on the information-theoretic concept of mutual information (MI). The…

Machine Learning · Computer Science 2020-10-06 Nicolás I. Tapia , Pablo A. Estévez

Implicit graph neural networks have gained popularity in recent years as they capture long-range dependencies while improving predictive performance in static graphs. Despite the tussle between performance degradation due to the…

Machine Learning · Computer Science 2024-06-27 Yongjian Zhong , Hieu Vu , Tianbao Yang , Bijaya Adhikari

Learning on large graphs presents significant challenges, with traditional Message Passing Neural Networks suffering from computational and memory costs scaling linearly with the number of edges. We introduce the Intersecting Block Graph…

Social and Information Networks · Computer Science 2026-02-12 Jonathan Kouchly , Ben Finkelshtein , Michael Bronstein , Ron Levie

Despite their success in various domains, the growing dependence on GNNs raises a critical concern about the nature of the combinatorial reasoning underlying their predictions, which is often hidden within their black-box architectures.…

Machine Learning · Computer Science 2026-03-03 Yue Niu , Zhaokai Sun , Jiayi Yang , Xiaofeng Cao , Rui Fan , Xin Sun , Hanli Wang , Wei Ye

Graph Neural Network pretraining is pivotal for leveraging unlabeled graph data. However, generalizing across heterogeneous domains remains a major challenge due to severe distribution shifts. Existing methods primarily focus on…

Machine Learning · Computer Science 2026-04-14 Yang Yan , Qiuyan Wang , Tianjin Huang , Qiudong Yu , Kexin Zhang

Graphs serve as generic tools to encode the underlying relational structure of data. Often this graph is not given, and so the task of inferring it from nodal observations becomes important. Traditional approaches formulate a convex inverse…

Machine Learning · Computer Science 2024-06-24 Max Wasserman , Gonzalo Mateos