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In the context of reconstructing phylogenetic networks from a collection of phylogenetic trees, several characterisations and subsequently algorithms have been established to reconstruct a phylogenetic network that collectively embeds all…

Combinatorics · Mathematics 2023-08-21 Janosch Döcker , Simone Linz , Charles Semple

It appeared recently that the classical random graph model used to represent real-world complex networks does not capture their main properties. Since then, various attempts have been made to provide accurate models. We study here a model…

Statistical Mechanics · Physics 2021-03-22 Jean-Loup Guillaume , Matthieu Latapy

We introduce graphcodes, a novel multi-scale summary of the topological properties of a dataset that is based on the well-established theory of persistent homology. Graphcodes handle datasets that are filtered along two real-valued scale…

Algebraic Topology · Mathematics 2024-05-24 Michael Kerber , Florian Russold

Here we introduce simple structures for the analysis of complex hypergraphs, hypergraph animals. These structures are designed to describe the local node neighbourhoods of nodes in hypergraphs. We establish their relationships to lattice…

Molecular Networks · Quantitative Biology 2024-07-08 Michael P. H. Stumpf

Graph-structured data appears frequently in domains including chemistry, natural language semantics, social networks, and knowledge bases. In this work, we study feature learning techniques for graph-structured inputs. Our starting point is…

Machine Learning · Computer Science 2017-09-26 Yujia Li , Daniel Tarlow , Marc Brockschmidt , Richard Zemel

We use the correspondence between hypergraphs and their associated edge ideals to study the minimal graded free resolution of squarefree monomial ideals. The theme of this paper is to understand how the combinatorial structure of a…

Commutative Algebra · Mathematics 2007-06-13 Huy Tai Ha , Adam Van Tuyl

Betweenness centrality is a centrality measure based on the overall amount of shortest paths passing through a given vertex. A graph is betweenness-uniform if all its vertices have the same betweenness centrality. We study the properties of…

Combinatorics · Mathematics 2023-09-11 David Hartman , Aneta Pokorná , Pavel Valtr

Inhomogeneous random graphs are fundamental models for real-world networks, where prescribed degrees are imposed as soft constraints. A common assumption in such models is that the degree distribution follows a power-law, capturing the…

Probability · Mathematics 2026-03-09 Riccardo Michielan , Clara Stegehuis , Bert Zwart

In this monography, it is proposed to consider the concepts of spectra of edge cuts and edge cycles of a graph as a basic mathematical structure for solving the problem of graph isomorphism. An edge cut is defined by an edge and the…

Combinatorics · Mathematics 2024-06-13 Sergey Kurapov , Maxim Davidovsky

Given a set D of nonnegative integers, we derive the asymptotic number of graphs with a givenvnumber of vertices, edges, and such that the degree of every vertex is in D. This generalizes existing results, such as the enumeration of graphs…

Combinatorics · Mathematics 2015-07-22 Élie de Panafieu , Lander Ramos

A digraph is connected-homogeneous if any isomorphism between finite connected induced subdigraphs extends to an automorphism of the digraph. We consider locally-finite connected-homogeneous digraphs with more than one end. In the case that…

Combinatorics · Mathematics 2010-11-30 Robert Gray , Rognvaldur G. Moller

Interaction nets are a graphical formalism inspired by Linear Logic proof-nets often used for studying higher order rewriting e.g. \Beta-reduction. Traditional presentations of interaction nets are based on graph theory and rely on…

Logic in Computer Science · Computer Science 2015-07-01 Marc de Falco

Comparability graphs are a popular class of graphs. We introduce as the digraph analogue of comparability graphs the class of comparability digraphs. We show that many concepts such as implication classes and the knotting graph for a…

Combinatorics · Mathematics 2022-04-05 Xiao-Lu Gao , Jing Huang , Shou-Jun Xu

Dirac proved that each $n$-vertex $2$-connected graph with minimum degree at least $k$ contains a cycle of length at least $\min\{2k, n\}$. We consider a hypergraph version of this result. A Berge cycle in a hypergraph is an alternating…

Combinatorics · Mathematics 2024-03-01 Alexandr Kostochka , Ruth Luo , Grace McCourt

Threshold graphs are a prevalent and widely studied class of simple graphs. They have several equivalent definitions which makes them a go-to class for finding examples and counter examples when testing and learning. This versatility has…

Combinatorics · Mathematics 2018-03-07 Derek Boeckner

We consider the Bernoulli bond percolation process (with parameter $p$) on infinite graphs and we give a general criterion for bounded degree graphs to exhibit a non-trivial percolation threshold based either on a single isoperimetric…

Mathematical Physics · Physics 2015-06-12 Rogério G. Alves , Aldo Procacci , Remy Sanchis

We study limits of convergent sequences of string graphs, that is, graphs with an intersection representation consisting of curves in the plane. We use these results to study the limiting behavior of a sequence of random string graphs. We…

Combinatorics · Mathematics 2014-03-13 Svante Janson , Andrew J. Uzzell

We consider Stanley--Reisner rings $k[x_1,...,x_n]/I(\mc{H})$ where $I(\mc{H})$ is the edge ideal associated to some particular classes of hypergraphs. For instance, we consider hypergraphs that are natural generalizations of graphs that…

Commutative Algebra · Mathematics 2015-10-12 Eric Emtander , Fatemeh Mohammadi , Somayeh Moradi

Over all graphs (or unicyclic graphs) of a given order, we characterise those graphs that minimise or maximise the number of connected induced subgraphs. For each of these classes, we find that the graphs that minimise the number of…

Combinatorics · Mathematics 2019-09-18 Audace A. V. Dossou-Olory

Let $H$ be a fixed graph whose edges are colored red and blue and let $\beta \in [0,1]$. Let $I(H, \beta)$ be the (asymptotically normalized) maximum number of copies of $H$ in a large red/blue edge-colored complete graph $G$, where the…

Combinatorics · Mathematics 2026-01-08 József Balogh , Bernard Lidický , Dhruv Mubayi , Florian Pfender , Jan Volec