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We present Trieste, an open-source Python package for Bayesian optimization and active learning benefiting from the scalability and efficiency of TensorFlow. Our library enables the plug-and-play of popular TensorFlow-based models within…

Mixture models are powerful statistical models used in many applications ranging from density estimation to clustering and classification. When dealing with mixture models, there are many issues that the experimenter should be aware of and…

Machine Learning · Statistics 2015-07-23 Reshad Hosseini , Mohamadreza Mash'al

Despite the explosion of interest in healthcare AI research, the reproducibility and benchmarking of those research works are often limited due to the lack of standard benchmark datasets and diverse evaluation metrics. To address this…

Machine Learning · Computer Science 2021-01-13 Yue Zhao , Zhi Qiao , Cao Xiao , Lucas Glass , Jimeng Sun

We present PySCo, a fast and user-friendly Python library designed to run cosmological $N$-body simulations across various cosmological models, such as $\Lambda$CDM and $w_0w_a$CDM, and alternative theories of gravity, including $f(R)$,…

Cosmology and Nongalactic Astrophysics · Physics 2026-01-08 Michel-Andrès Breton

We present the design of a flexible quantum-chemical method development framework, which supports employing any type of basis function. This design has been implemented in the light-weight program package molsturm, yielding a…

Chemical Physics · Physics 2018-11-15 Michael F. Herbst , Andreas Dreuw , James Emil Avery

PEPit is a Python package aiming at simplifying the access to worst-case analyses of a large family of first-order optimization methods possibly involving gradient, projection, proximal, or linear optimization oracles, along with their…

Optimization and Control · Mathematics 2024-06-18 Baptiste Goujaud , Céline Moucer , François Glineur , Julien Hendrickx , Adrien Taylor , Aymeric Dieuleveut

This paper introduces mFST, a new Python library for working with Finite-State Machines based on OpenFST. mFST is a thin wrapper for OpenFST and exposes all of OpenFST's methods for manipulating FSTs. Additionally, mFST is the only Python…

Machine Learning · Computer Science 2020-12-08 Matthew Francis-Landau

We present TopoTB, a software package written in the Mathematica language, designed to compute electronic structures, topological properties, and phase diagrams based on tight-binding models. TopoTB is user-friendly, with an interactive…

Materials Science · Physics 2024-03-14 Xinliang Huang , Fawei Zheng , Ning Hao

$\textit{Pymc-learn}$ is a Python package providing a variety of state-of-the-art probabilistic models for supervised and unsupervised machine learning. It is inspired by $\textit{scikit-learn}$ and focuses on bringing probabilistic machine…

Machine Learning · Statistics 2018-11-05 Daniel Emaasit

Even todays most advanced machine learning models are easily fooled by almost imperceptible perturbations of their inputs. Foolbox is a new Python package to generate such adversarial perturbations and to quantify and compare the robustness…

Machine Learning · Computer Science 2018-03-21 Jonas Rauber , Wieland Brendel , Matthias Bethge

We introduce \texttt{pycobra}, a Python library devoted to ensemble learning (regression and classification) and visualisation. Its main assets are the implementation of several ensemble learning algorithms, a flexible and generic interface…

Computation · Statistics 2019-05-24 Benjamin Guedj , Bhargav Srinivasa Desikan

We present an updated version of PyQBench, an open-source Python library designed for benchmarking gate-based quantum computers, with a focus on certifying qubit von Neumann measurements. This version extends PyQBench's capabilities by…

Quantum Physics · Physics 2025-06-05 Paulina Lewandowska , Martin Beseda

For building successful Machine Learning (ML) systems, it is imperative to have high quality data and well tuned learning models. But how can one assess the quality of a given dataset? And how can the strengths and weaknesses of a model on…

Machine Learning · Computer Science 2021-09-30 Pedro Yuri Arbs Paiva , Kate Smith-Miles , Maria Gabriela Valeriano , Ana Carolina Lorena

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

Bodge is a free and open-source Python package for constructing large-scale real-space tight-binding models for calculations in condensed matter physics. "Large-scale" means that it should remain performant even for lattices with millions…

Superconductivity · Physics 2024-10-14 Jabir Ali Ouassou

A common technique in the study of complex quantum-mechanical systems is to reduce the number of degrees of freedom in the Hamiltonian by using quasi-degenerate perturbation theory. While the Schrieffer--Wolff transformation achieves this…

Quantum Physics · Physics 2025-02-19 Isidora Araya Day , Sebastian Miles , Hugo K. Kerstens , Daniel Varjas , Anton R. Akhmerov

In modern-day astronomy, near-infrared, optical, and ultraviolet spectroscopy are indispensable for studying a wide range of phenomena, from measuring black hole masses to analyzing chemical abundances in stellar atmospheres. However,…

Instrumentation and Methods for Astrophysics · Physics 2025-07-21 Raniere de Menezes , Francesco Massaro , Michela Negro , Claudia M. Raiteri , Harold Peña-Herazo , Jose A. Acosta-Pulido

imbalanced-ensemble, abbreviated as imbens, is an open-source Python toolbox for leveraging the power of ensemble learning to address the class imbalance problem. It provides standard implementations of popular ensemble imbalanced learning…

Machine Learning · Computer Science 2023-02-24 Zhining Liu , Jian Kang , Hanghang Tong , Yi Chang

We present an open-source tensor network Python library for quantum many-body simulations. At its core is an abelian-symmetric tensor, implemented as a sparse block structure managed by logical layer on top of dense multi-dimensional array…

Strongly Correlated Electrons · Physics 2025-03-05 Marek M. Rams , Gabriela Wójtowicz , Aritra Sinha , Juraj Hasik
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