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We introduce an annotated corpus of 600 ophthalmology notes labeled with detailed spatial and contextual information of ophthalmic entities. We extend our previously proposed frame semantics-based spatial representation schema,…

Computation and Language · Computer Science 2023-05-23 Surabhi Datta , Tasneem Kaochar , Hio Cheng Lam , Nelly Nwosu , Luca Giancardo , Alice Z. Chuang , Robert M. Feldman , Kirk Roberts

Deep learning based disease detection and segmentation algorithms promise to improve many clinical processes. However, such algorithms require vast amounts of annotated training data, which are typically not available in the medical context…

Image and Video Processing · Electrical Eng. & Systems 2021-11-02 Moritz Platscher , Jonathan Zopes , Christian Federau

Acute stroke lesion segmentation tasks are of great clinical interest as they can help doctors make better informed treatment decisions. Magnetic resonance imaging (MRI) is time demanding but can provide images that are considered gold…

Computer Vision and Pattern Recognition · Computer Science 2019-04-25 Albert Clèrigues , Sergi Valverde , Jose Bernal , Jordi Freixenet , Arnau Oliver , Xavier Lladó

Purpose: Multi-expert deep learning training methods to automatically quantify ischemic brain tissue on Non-Contrast CT Materials and Methods: The data set consisted of 260 Non-Contrast CTs from 233 patients of acute ischemic stroke…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Sophie Ostmeier , Brian Axelrod , Benjamin Pulli , Benjamin F. J. Verhaaren , Abdelkader Mahammedi , Yongkai Liu , Christian Federau , Greg Zaharchuk , Jeremy J. Heit

Medical brain image analysis is a necessary step in Computer Assisted /Aided Diagnosis (CAD) systems. Advancements in both hardware and software in the past few years have led to improved segmentation and classification of various diseases.…

Image and Video Processing · Electrical Eng. & Systems 2021-01-15 Darwin Castillo , Vasudevan Lakshminarayanan , Maria J. Rodriguez-Alvarez

Brain stroke is a leading cause of mortality and long-term disability worldwide, underscoring the need for precise and rapid prediction techniques. Computed Tomography (CT) scan is considered one of the most effective methods for diagnosing…

Computer Vision and Pattern Recognition · Computer Science 2025-12-19 Md. Sabbir Hossen , Eshat Ahmed Shuvo , Shibbir Ahmed Arif , Pabon Shaha , Anichur Rahman , Md. Saiduzzaman , Fahmid Al Farid , Hezerul Abdul Karim , Abu Saleh Musa Miah

Stroke is a major public health problem, affecting millions worldwide. Deep learning has recently demonstrated promise for enhancing the diagnosis and risk prediction of stroke. However, existing methods rely on costly medical imaging…

Image and Video Processing · Electrical Eng. & Systems 2025-12-17 Saeed Shurrab , Aadim Nepal , Terrence J. Lee-St. John , Nicola G. Ghazi , Bartlomiej Piechowski-Jozwiak , Farah E. Shamout

Training medical image analysis models requires large amounts of expertly annotated data which is time-consuming and expensive to obtain. Images are often accompanied by free-text radiology reports which are a rich source of information. In…

This paper presents a lightweight framework for classifying brain stroke types from Diffusion-Weighted Imaging (DWI) MRI scans, employing a Multi-Layer Perceptron (MLP) neural network with Wavelet Transform for feature extraction. Accurate…

Image and Video Processing · Electrical Eng. & Systems 2025-06-19 Mana Mohammadi , Amirhesam Jafari Rad , Ashkan Behrouzi

Accurate delineation of acute ischemic stroke lesions in MRI is a key component of stroke diagnosis and management. In recent years, deep learning models have been successfully applied to the automatic segmentation of such lesions. While…

Computer Vision and Pattern Recognition · Computer Science 2026-01-14 Vincent Roca , Martin Bretzner , Hilde Henon , Laurent Puy , Grégory Kuchcinski , Renaud Lopes

We define a representation framework for extracting spatial information from radiology reports (Rad-SpRL). We annotated a total of 2000 chest X-ray reports with 4 spatial roles corresponding to the common radiology entities. Our focus is on…

Computation and Language · Computer Science 2019-08-14 Surabhi Datta , Yuqi Si , Laritza Rodriguez , Sonya E Shooshan , Dina Demner-Fushman , Kirk Roberts

Intracerebral hemorrhage (ICH) is the most fatal subtype of stroke and is characterized by a high incidence of disability. Accurate segmentation of the ICH region and prognosis prediction are critically important for developing and refining…

Computer Vision and Pattern Recognition · Computer Science 2024-11-08 Xinlei Yu , Ahmed Elazab , Ruiquan Ge , Hui Jin , Xinchen Jiang , Gangyong Jia , Qing Wu , Qinglei Shi , Changmiao Wang

More than 13 million people suffer from ischemic cerebral stroke worldwide each year. Thrombolytic treatment can reduce brain damage but has a narrow treatment window. Computed Tomography Perfusion imaging is a commonly used primary…

Image and Video Processing · Electrical Eng. & Systems 2021-04-22 Luca Tomasetti , Kjersti Engan , Mahdieh Khanmohammadi , Kathinka Dæhli Kurz

Stroke is widely considered as the second most common cause of mortality. The adverse consequences of stroke have led to global interest and work for improving the management and diagnosis of stroke. Various techniques for data mining have…

Machine Learning · Computer Science 2021-10-22 Muhammad Salman Pathan , Jianbiao Zhang , Deepu John , Avishek Nag , Soumyabrata Dev

Segmentation of ischemic stroke and intracranial hemorrhage on computed tomography is essential for investigation and treatment of stroke. In this paper, we modified the U-Net CNN architecture for the stroke identification problem using…

Image and Video Processing · Electrical Eng. & Systems 2020-04-01 Manvel Avetisian , Vladimir Kokh , Alex Tuzhilin , Dmitry Umerenkov

Ischemic stroke is a common disease in the elderly population, which can cause long-term disability and even death. However, the time window for treatment of ischemic stroke in its acute stage is very short. To fast localize and…

Image and Video Processing · Electrical Eng. & Systems 2020-09-22 Bin Zhao , Shuxue Ding , Hong Wu , Guohua Liu , Chen Cao , Song Jin , Zhiyang Liu

Delineating infarcted tissue in ischemic stroke lesions is crucial to determine the extend of damage and optimal treatment for this life-threatening condition. However, this problem remains challenging due to high variability of ischemic…

Computer Vision and Pattern Recognition · Computer Science 2018-10-17 Jose Dolz , Ismail Ben Ayed , Christian Desrosiers

Blood vessel networks in the brain play a crucial role in stroke research, where understanding their topology is essential for analyzing blood flow dynamics. However, extracting detailed topological vessel network information from…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Joël Mathys , Andreas Plesner , Jorel Elmiger , Roger Wattenhofer

Learning to infer graph representations and performing spatial reasoning in a complex surgical environment can play a vital role in surgical scene understanding in robotic surgery. For this purpose, we develop an approach to generate the…

Computer Vision and Pattern Recognition · Computer Science 2020-09-14 Mobarakol Islam , Lalithkumar Seenivasan , Lim Chwee Ming , Hongliang Ren

Medical images used in clinical practice are heterogeneous and not the same quality as scans studied in academic research. Preprocessing breaks down in extreme cases when anatomy, artifacts, or imaging parameters are unusual or protocols…

Image and Video Processing · Electrical Eng. & Systems 2022-08-31 Mostafa Mehdipour Ghazi , Mads Nielsen