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In this paper we propose a nonlinear elasticity model of macromolecular conformational change (deformation) induced by electrostatic forces generated by an implicit solvation model. The Poisson-Boltzmann equation for the electrostatic…

Analysis of PDEs · Mathematics 2010-01-12 Yongcheng Zhou , Michael Holst , James Andrew McCammon

In biological materials, strong binding despite an applied load force is often based on clusters of dynamic bonds that share the load. Different macroscopic behaviors have been described depending on whether the load is shared locally or…

Biological Physics · Physics 2025-09-11 Yannick Lüdemann , Stefan Klumpp , Komal Bhattacharyya

In horizontally shaken granular material different types of pattern formation have been reported. We want to deal with the convection instability which has been observed in experiments and which recently has been investigated numerically.…

Materials Science · Physics 2007-05-23 Clara Saluena , Thorsten Poeschel

Predicting the mechanical response of the soft gel materials under external deformation is of paramount importance in many areas, such as foods, pharmaceuticals, solid-liquid separations, cosmetics, aerogels and drug delivery. Most of the…

Soft Condensed Matter · Physics 2023-05-22 Divas Singh Dagur , Yezaz Ahmed Gadi Man , Saikat Roy

A classic problem, the design of the tallest column, is solved again using a different method. By the use of a similarity solution the equations are transformed and the difficult singularity at the endpoint is peeled away. The resulting…

Mathematical Physics · Physics 2008-01-22 Yossi Farjoun , John C. Neu

We study a three-dimensional fluid model describing rapidly rotating convection that takes place in tall columnar structures. The purpose of this model is to investigate the cyclonic and anticyclonic coherent structures. Global existence,…

Analysis of PDEs · Mathematics 2018-10-09 Chongsheng Cao , Yanqiu Guo , Edriss S. Titi

Motivated by the buckling of glassy crusts formed on evaporating droplets of polymer and colloid solutions, we numerically model the deformation and buckling of spherical elastic caps controlled by varying the volume between the shell and…

Materials Science · Physics 2009-11-11 D. A. Head

The Generalized Elastic Model is a linear stochastic model which accounts for the behaviour of many physical systems in nature, ranging from polymeric chains to single-file systems. If an external perturbation is exerted \emph{only} on a…

Statistical Mechanics · Physics 2013-05-14 Alessandro Taloni , Aleksei Chechkin , Joseph Klafter

Deuteron coalescence, during relativistic nucleus-nucleus collisions, is carried out in a model incorporating a minimal quantal treatment of the formation of the cluster from its individual nucleons by evaluating the overlap of intial…

Nuclear Theory · Physics 2008-11-26 D. E. Kahana , S. H. Kahana , Y. Pang , A. J. Baltz , C. B. Dover , E. Schnedermann , T. J. Schlagel

The injection of a long flexible rod into a two-dimensional domain yields a complex pattern commonly studied through elasticity theory, packing analysis, and fractal geometries. "Loop" is a one-vertex entity that is naturally formed in this…

Soft Condensed Matter · Physics 2021-03-29 T. A. Sobral , V. H. de Holanda , F. C. B. Leal , T. T. Saraiva

A highly deformable rod, modelled as the extensible elastica, is connected to a movable clamp at one end and to a pin sliding along a frictionless curved profile at the other. Bifurcation analysis shows that axial compliance provides a…

Classical Physics · Physics 2022-09-12 Panagiotis Koutsogiannakis , Davide Bigoni , Francesco Dal Corso

The influence of initial shape imperfections on the post-buckling and translational behavior of encapsulated microbubbles is investigated subject to acoustic excitation in an unbounded flow. Bifurcation analysis reveals that imperfections…

Fluid Dynamics · Physics 2025-08-26 Maria Vlachomitrou , Georges Chabouh , Alkmini Lytra , Nikos Pelekasis

Deformations of conventional solids are described via elasticity, a classical field theory whose form is constrained by translational and rotational symmetries. However, flexible metamaterials often contain an additional approximate…

Soft Condensed Matter · Physics 2022-02-02 Michael Czajkowski , Corentin Coulais , Martin van Hecke , D. Zeb Rocklin

Localized pattern formations and "two-phase" deformations are studied theoretically in soft compressible cylinders subject to surface tension and axial loading through several force-controlled loading scenarios. By drawing upon known…

Pattern Formation and Solitons · Physics 2022-11-23 Dominic Emery

The presence of interparticle cohesion can drastically change the behavior of granular materials. For instance, powders are challenging to handle, and one can make a sandcastle using wet grains. In this study, we report experimental results…

Soft Condensed Matter · Physics 2025-11-20 Ram Sudhir Sharma , Wladimir Sarlin , Langqi Xing , Cyprien Morize , Philippe Gondret , Alban Sauret

One of the least studied universal deformations of incompressible nonlinear elasticity, namely the straightening of a sector of a circular cylinder into a rectangular block, is revisited here and, in particular, issues of existence and…

Soft Condensed Matter · Physics 2020-09-22 Michel Destrade , Ray W. Ogden , Ivonne Sgura , Luigi Vergori

Filamentous bio-materials such as fibrin or collagen networks exhibit an enormous stiffening of their elastic moduli upon large deformations. This pronounced nonlinear behavior stems from a significant separation between the stiffnesses…

Soft Condensed Matter · Physics 2019-05-21 Robbie Rens , Carlos Villarroel , Gustavo Düring , Edan Lerner

The statistical effects of different conditions in physical vapor deposition, such as sputter deposition, have on thin film morphology has long been the subject of interest. One notable effect is that of column development due to…

Materials Science · Physics 2018-02-26 William J. Meese , Toh-Ming Lu

A mathematical model describing the erosion or leaching of a solid material by a flowing fluid in a column is developed. This involves an advection-diffusion equation coupled to a linear kinetic reaction describing the mass transfer between…

Other Condensed Matter · Physics 2022-04-04 Timothy G. Myers , Abel Valverde , Maria Aguareles , Marc Calvo-Schwarzwalder , Francesc Font

Understanding thin sheets, ranging from the macro to the nanoscale, can allow control of mechanical properties such as deformability. Out-of-plane buckling due to in-plane compression can be a key feature in designing new materials. While…

Statistical Mechanics · Physics 2021-03-18 Paul Z. Hanakata , Sourav S. Bhabesh , Mark J. Bowick , David R. Nelson , David Yllanes
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