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We derive a Poisson random field model for population site polymorphisms differences within and between two species that share a relatively recent common ancestor. The model can be either equilibrium or time inhomogeneous. We first consider…

Polynomial functors are useful in the theory of data types, where they are often called containers. They are also useful in algebra, combinatorics, topology, and higher category theory, and in this broader perspective the polynomial aspect…

Recently, Escobar, Harada, and Manon introduced the theory of polyptych lattices. This theory gives a general framework for constructing projective varieties from polytopes in a polyptych lattice. When all the mutations of the polyptych…

In the early 1990's, Billera and Sturmfels introduced the monotone path polytope (MPP), a special case of the general theory of fiber polytopes that associates a polytope to a pair $(P,\varphi)$ of a polytope $P$ and linear functional…

We introduce the notion of a favourable module for a complex unipotent algebraic group, whose properties are governed by the combinatorics of an associated polytope. We describe two filtrations of the module, one given by the total degree…

Lots of research focuses on the combinatorics behind various bases of cluster algebras. This paper studies the natural basis of a type A cluster algebra, which consists of all cluster monomials. We introduce a new kind of combinatorial…

This paper announces results on the behavior of some important algebraic and topological invariants --- Euler characteristic, arithmetic genus, and their intersection homology analogues; the signature, etc. --- and their associated…

Let $Y$ be a (partial) minimal model of a scheme $V$ with a cluster structure. Under natural assumptions, for every choice of seed we associate a Newton--Okounkov body to every divisor on $Y$ supported on $Y \setminus V$ and show that these…

Recently, in a work that grew out of their exploration of interlacing polynomials, Marcus, Spielman and Srivastava and then Marcus studied certain combinatorial polynomial convolutions. These convolutions preserve real-rootedness and…

We propose a refined but natural notion of toric degenerations that respect a given embedding and show that within this framework a Gorenstein Fano variety can only be degenerated to a Gorenstein Fano toric variety if it is embedded via its…

In algebraic, topological, and geometric combinatorics inequalities among the coefficients of combinatorial polynomials are frequently studied. Recently a notion called the alternatingly increasing property, which is stronger than…

To a topological groupoid endowed with an involution, we associate a topological groupoid of fixed points, generalizing the fixed-point subspace of a topological space with involution. We prove that when the topological groupoid with…

Given a point A in the real Grassmannian, it is well-known that one can construct a soliton solution u_A(x,y,t) to the KP equation. The contour plot of such a solution provides a tropical approximation to the solution when the variables x,…

The purpose of this thesis is to study classical combinatorial objects, such as polytopes, polytopal complexes, and subspace arrangements, using tools that have been developed in combinatorial topology, especially those tools developed in…

We study the problem of characterizing polynomial vector fields that commute with a given polynomial vector field on a plane. It is a classical result that one can write down solution formulas for an ODE that corresponds to a planar vector…

Based on the combinatorial description of the moduli spaces of curves provided by Strebel differentials, Witten and Kontsevich have introduced combinatorial cohomology classes $W_{(m_0,m_1,m_2,\dots),n}$, and conjectured that these can be…

A theory has been presented previously in which the geometrical structure of a real four-dimensional space time manifold is expressed by a real orthonormal tetrad, and the group of diffeomorphisms is replaced by a larger group. The group…

We use the geometry of the stellahedral toric variety to study matroids. We identify the valuative group of matroids with the cohomology ring of the stellahedral toric variety, and show that valuative, homological, and numerical equivalence…

In 2013, Lee, Li, and Zelevinsky introduced combinatorial objects called compatible pairs to construct the greedy bases for rank-2 cluster algebras, consisting of indecomposable positive elements including the cluster monomials.…

The field theory Galilean symmetry, which was introduced in the context of modified gravity, gives a neat way to construct Lorentz-covariant theories of a scalar field, such that the equations of motion contain at most second-order…