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This study presents three deidentified large medical text datasets, named DISCHARGE, ECHO and RADIOLOGY, which contain 50K, 16K and 378K pairs of report and summary that are derived from MIMIC-III, respectively. We implement convincing…

Computation and Language · Computer Science 2023-02-09 Yunqi Zhu , Xuebing Yang , Yuanyuan Wu , Wensheng Zhang

Radiology reports have been widely used for extraction of various clinically significant information about patients' imaging studies. However, limited research has focused on standardizing the entities to a common radiology-specific…

Computation and Language · Computer Science 2020-09-14 Surabhi Datta , Jordan Godfrey-Stovall , Kirk Roberts

Objective: Automatic text summarization tools can help users in the biomedical domain to access information efficiently from a large volume of scientific literature and other sources of text documents. In this paper, we propose a…

Information Retrieval · Computer Science 2018-11-26 Milad Moradi , Nasser Ghadiri

Current LLMs for creating fully-structured reports face the challenges of formatting errors, content hallucinations, and privacy leakage issues when uploading data to external servers.We aim to develop an open-source, accurate LLM for…

Artificial Intelligence · Computer Science 2025-09-29 Chuang Niu , Md Sayed Tanveer , Md Zabirul Islam , Parisa Kaviani , Qing Lyu , Mannudeep K. Kalra , Christopher T. Whitlow , Ge Wang

Medical consultation dialogues contain critical clinical information, yet their unstructured nature hinders effective utilization in diagnosis and treatment. Traditional methods, relying on rule-based or shallow machine learning techniques,…

Computation and Language · Computer Science 2025-04-24 Shuguang Zhao , Qiangzhong Feng , Zhiyang He , Peipei Sun , Yingying Wang , Xiaodong Tao , Xiaoliang Lu , Mei Cheng , Xinyue Wu , Yanyan Wang , Wei Liang

Manual chart review remains an extremely time-consuming and resource-intensive component of clinical research, requiring experts to extract often complex information from unstructured electronic health record (EHR) narratives. We present a…

Automated radiology report generation aims to generate radiology reports that contain rich, fine-grained descriptions of radiology imaging. Compared with image captioning in the natural image domain, medical images are very similar to each…

Computer Vision and Pattern Recognition · Computer Science 2023-07-21 Yuhao Wang

Automatic report generation has arisen as a significant research area in computer-aided diagnosis, aiming to alleviate the burden on clinicians by generating reports automatically based on medical images. In this work, we propose a novel…

Computer Vision and Pattern Recognition · Computer Science 2024-06-04 Jun Li , Tongkun Su , Baoliang Zhao , Faqin Lv , Qiong Wang , Nassir Navab , Ying Hu , Zhongliang Jiang

The advent of large language models (LLMs) has opened new avenues for analyzing complex, unstructured data, particularly within the medical domain. Electronic Health Records (EHRs) contain a wealth of information in various formats,…

Information Retrieval · Computer Science 2025-06-10 Wu Hao Ran , Xi Xi , Furong Li , Jingyi Lu , Jian Jiang , Hui Huang , Yuzhuan Zhang , Shi Li

Structured data offers a sophisticated mechanism for the organization of information. Existing methodologies for the text-serialization of structured data in the context of large language models fail to adequately address the heterogeneity…

Computation and Language · Computer Science 2024-02-20 YiQiu Guo , Yuchen Yang , Ya Zhang , Yu Wang , Yanfeng Wang

Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where…

Computation and Language · Computer Science 2021-12-13 Jetsun Whitton , Anthony Hunter

Medical imaging plays a significant role in clinical practice of medical diagnosis, where the text reports of the images are essential in understanding them and facilitating later treatments. By generating the reports automatically, it is…

Computation and Language · Computer Science 2022-04-29 Zhihong Chen , Yaling Shen , Yan Song , Xiang Wan

Large Language Models (LLMs) have shown significant advances in text generation but often lack the reliability needed for autonomous deployment in high-stakes domains like healthcare, law, and finance. Existing approaches rely on external…

Artificial Intelligence · Computer Science 2024-11-12 Ninad Naik

Analyzing radiology reports is a time-consuming and error-prone task, which raises the need for an efficient automated radiology report analysis system to alleviate the workloads of radiologists and encourage precise diagnosis. In this…

Computation and Language · Computer Science 2022-04-21 Song Wang , Mingquan Lin , Ying Ding , George Shih , Zhiyong Lu , Yifan Peng

Automatic radiology report generation has attracted enormous research interest due to its practical value in reducing the workload of radiologists. However, simultaneously establishing global correspondences between the image (e.g., Chest…

Computer Vision and Pattern Recognition · Computer Science 2023-07-19 Yaowei Li , Bang Yang , Xuxin Cheng , Zhihong Zhu , Hongxiang Li , Yuexian Zou

Automatically generating medical reports for retinal images is one of the promising ways to help ophthalmologists reduce their workload and improve work efficiency. In this work, we propose a new context-driven encoding network to…

Computer Vision and Pattern Recognition · Computer Science 2021-06-01 Jia-Hong Huang , Ting-Wei Wu , Chao-Han Huck Yang , Marcel Worring

Automatic radiology report generation is a promising application of multimodal deep learning, aiming to reduce reporting workload and improve consistency. However, current state-of-the-art (SOTA) systems - such as Multimodal AI for…

This paper explores the development and application of an automated system designed to extract information from semi-structured interview transcripts. Given the labor-intensive nature of traditional qualitative analysis methods, such as…

Computation and Language · Computer Science 2024-03-11 Angelina Parfenova

This paper proposes a new model for extracting an interpretable sentence embedding by introducing self-attention. Instead of using a vector, we use a 2-D matrix to represent the embedding, with each row of the matrix attending on a…

Computation and Language · Computer Science 2017-03-10 Zhouhan Lin , Minwei Feng , Cicero Nogueira dos Santos , Mo Yu , Bing Xiang , Bowen Zhou , Yoshua Bengio

Patient hand-off and triage are two fundamental problems in health care. Often doctors must painstakingly summarize complex findings to efficiently communicate with specialists and quickly make decisions on which patients have the most…

Computation and Language · Computer Science 2024-09-30 Raul Salles de Padua , Imran Qureshi
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