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Graph neural network (GNN)-based graph learning has been popular in natural language and programming language processing, particularly in text and source code classification. Typically, GNNs are constructed by incorporating alternating…

Machine Learning · Computer Science 2024-05-24 Zeming Dong , Qiang Hu , Zhenya Zhang , Yuejun Guo , Maxime Cordy , Mike Papadakis , Yves Le Traon , Jianjun Zhao

Graph Neural Networks (GNNs) have proven to be effective in processing and learning from graph-structured data. However, previous works mainly focused on understanding single graph inputs while many real-world applications require pair-wise…

Machine Learning · Computer Science 2023-07-31 Junhyun Lee , Bumsoo Kim , Minji Jeon , Jaewoo Kang

Graph neural networks (GNN) has been demonstrated to be effective in classifying graph structures. To further improve the graph representation learning ability, hierarchical GNN has been explored. It leverages the differentiable pooling to…

Social and Information Networks · Computer Science 2019-12-19 Kaixiong Zhou , Qingquan Song , Xiao Huang , Daochen Zha , Na Zou , Xia Hu

With the advent of data science, the analysis of network or graph data has become a very timely research problem. A variety of recent works have been proposed to generalize neural networks to graphs, either from a spectral graph theory or a…

Machine Learning · Computer Science 2019-12-12 Xing Gao , Hongkai Xiong , Pascal Frossard

Prior studies using graph neural networks (GNNs) for image classification have focused on graphs generated from a regular grid of pixels or similar-sized superpixels. In the latter, a single target number of superpixels is defined for an…

Computer Vision and Pattern Recognition · Computer Science 2022-02-01 Varun Vasudevan , Maxime Bassenne , Md Tauhidul Islam , Lei Xing

Graph Neural Networks (GNNs) are widely adopted in advanced AI systems due to their capability of representation learning on graph data. Even though GNN explanation is crucial to increase user trust in the systems, it is challenging due to…

Machine Learning · Computer Science 2022-08-08 Tien-Cuong Bui , Wen-syan Li , Sang-Kyun Cha

Convolutional layers in graph neural networks are a fundamental type of layer which output a representation or embedding of each graph vertex. The representation typically encodes information about the vertex in question and its…

Machine Learning · Computer Science 2020-08-26 Padraig Corcoran

Graph neural networks (GNN) extends deep learning to graph-structure dataset. Similar to Convolutional Neural Networks (CNN) using on image prediction, convolutional and pooling layers are the foundation to success for GNN on graph…

Machine Learning · Computer Science 2023-02-28 Lingjie Kong , Yun Liao

Recent work in graph neural networks (GNNs) has led to improvements in molecular activity and property prediction tasks. Unfortunately, GNNs often fail to capture the relative importance of interactions between molecular substructures, in…

Machine Learning · Computer Science 2020-04-03 Emmanuel Noutahi , Dominique Beaini , Julien Horwood , Sébastien Giguère , Prudencio Tossou

Graph Neural Networks (GNNs) with numerical node features and graph structure as inputs have demonstrated superior performance on various supervised learning tasks with graph data. However the numerical node features utilized by GNNs are…

Machine Learning · Computer Science 2022-06-20 Jiuhai Chen , Jonas Mueller , Vassilis N. Ioannidis , Tom Goldstein , David Wipf

Graph neural networks have attracted wide attentions to enable representation learning of graph data in recent works. In complement to graph convolution operators, graph pooling is crucial for extracting hierarchical representation of graph…

Machine Learning · Computer Science 2020-06-22 Xing Gao , Wenrui Dai , Chenglin Li , Hongkai Xiong , Pascal Frossard

To bridge the semantic gap between vision and language (VL), it is necessary to develop a good alignment strategy, which includes handling semantic diversity, abstract representation of visual information, and generalization ability of…

Computer Vision and Pattern Recognition · Computer Science 2025-03-04 Siyu Zhang , Wenzhe Liu , Yeming Chen , Yiming Wu , Heming Zheng , Cheng Cheng

Graph neural networks (GNNs) excel on relational data by passing messages over node features and structure, but they can amplify training data biases, propagating discriminatory attributes and structural imbalances into unfair outcomes.…

Machine Learning · Computer Science 2025-10-30 Chuxun Liu , Debo Cheng , Qingfeng Chen , Jiangzhang Gan , Jiuyong Li , Lin Liu

Drug discovery often relies on the successful prediction of protein-ligand binding affinity. Recent advances have shown great promise in applying graph neural networks (GNNs) for better affinity prediction by learning the representations of…

Quantitative Methods · Quantitative Biology 2021-07-24 Shuangli Li , Jingbo Zhou , Tong Xu , Liang Huang , Fan Wang , Haoyi Xiong , Weili Huang , Dejing Dou , Hui Xiong

Hierarchical graph pooling(HGP) are designed to consider the fact that conventional graph neural networks(GNN) are inherently flat and are also not multiscale. However, most HGP methods suffer not only from lack of considering global…

Machine Learning · Computer Science 2025-04-14 Farshad Noravesh , Reza Haffari , Layki Soon , Arghya Pal

Graph neural networks are increasingly becoming the framework of choice for graph-based machine learning. In this paper, we propose a new graph neural network architecture that substitutes classical message passing with an analysis of the…

Machine Learning · Computer Science 2024-01-18 Alessandro Bicciato , Luca Cosmo , Giorgia Minello , Luca Rossi , Andrea Torsello

We introduce a novel variant of GNN for particle tracking called Hierarchical Graph Neural Network (HGNN). The architecture creates a set of higher-level representations which correspond to tracks and assigns spacepoints to these tracks,…

High Energy Physics - Experiment · Physics 2023-03-06 Ryan Liu , Paolo Calafiura , Steven Farrell , Xiangyang Ju , Daniel Thomas Murnane , Tuan Minh Pham

Existing Graph Neural Networks (GNNs) are limited to process graphs each of whose vertices is represented by a vector or a single value, limited their representing capability to describe complex objects. In this paper, we propose the first…

Machine Learning · Computer Science 2024-07-02 Jiongshu Wang , Jing Yang , Jiankang Deng , Hatice Gunes , Siyang Song

In recent years, unsupervised and self-supervised graph representation learning has gained popularity in the research community. However, most proposed methods are focused on homogeneous networks, whereas real-world graphs often contain…

Machine Learning · Computer Science 2024-02-29 Piotr Bielak , Tomasz Kajdanowicz

End-to-end training of graph neural networks (GNN) on large graphs presents several memory and computational challenges, and limits the application to shallow architectures as depth exponentially increases the memory and space complexities.…

Machine Learning · Computer Science 2023-09-06 Oscar Pina , Verónica Vilaplana