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In recent literature there has been a lot of interest in the phenomena of noise induced transport in the absence of an average bias occurring in spatially periodic systems far from equilibrium. One of the main motivations in this area is to…

Biological Physics · Physics 2007-05-23 Raishma Krishnan , A. M. Jayannavar

It is generally recognized that a distinguishing feature of life is its peculiar capability to avoid equilibration. The origin of this capability and its evolution along the timeline of abiogenesis is not yet understood. We propose to study…

Molecular Networks · Quantitative Biology 2016-10-13 Dmitry Yu. Zubarev , Leonardo A. Pachón

Stochastic forces in natural systems are rarely isotropic. From hydrodynamically coupled colloids to chemical reaction networks, noise contributions are inherently correlated. Together with internal interactions and changing environments,…

Statistical Mechanics · Physics 2026-05-14 Andrea Marchetti , Daniel Maria Busiello , Giorgio Nicoletti

How stochastic, microscopic events generate deterministic, macroscopic properties is a fundamental question in physics. We address this question by developing a quantum master equation model for concentrated radical solutions, where random…

Chemical Physics · Physics 2026-05-26 Yoshiaki Uchida , Ryohei Kishi

We propose to describe the dynamics of phase transitions in terms of a non-stationary Generalized Langevin Equation for the order parameter. By construction, this equation is non-local in time, i.e.~it involves memory effects whose…

Statistical Mechanics · Physics 2021-02-10 Hugues Meyer , Fabian Glatzel , Wilkin Wöhler , Tanja SChilling

Quantum annealing leverages quantum tunneling for non-local searches, thereby minimizing memory effects that typically arise from metastabilities. Nonetheless, recent work has demonstrated robust hysteresis in large-scale transverse-field…

Quantum Physics · Physics 2025-07-25 Frank Barrows , Elijah Pelofske , Pratik Sathe , Francesco Caravelli , Cristiano Nisoli

In synaptic molecular communication (MC), the activation of postsynaptic receptors by neurotransmitters (NTs) is governed by a stochastic reaction-diffusion process. This randomness of synaptic MC contributes to the randomness of the…

Subcellular Processes · Quantitative Biology 2023-01-18 Sebastian Lotter , Maximilian Schäfer , Robert Schober

Chemical reactions in cell are subject to intense stochastic fluctuations. An important question is how the fundamental physiological behavior of cell is kept stable against those noisy perturbations. In this paper a stochastic model of…

Molecular Networks · Quantitative Biology 2009-11-13 Yurie Okabe , Masaki Sasai

It is well-known that gene activation/deactivation dynamics may be a major source of randomness in genetic networks, also in the case of large concentrations of the transcription factors. In this work, we investigate the effect of realistic…

Molecular Networks · Quantitative Biology 2014-10-28 Sebastiano de Franciscis , Giulio Caravagna , Alberto d'Onofrio

The initial time-dependence of a state in circumstances where it makes transitions to, or decay to, a second state has been investigated. In classical stochastic processes, the observed time dependence of transition or decay proportional to…

High Energy Physics - Phenomenology · Physics 2023-03-15 Maciej Rybczyński , Zbigniew Włodarczyk

Reconnection is an important process that rules dissipation and diffusion of magnetic energy in plasmas. It is already clear that its rate is enhanced by turbulence, and that reconnection itself may increase its stochasticity, but the main…

Plasma Physics · Physics 2021-07-07 Natalia Nowak , Grzegorz Kowal , Diego A. Falceta-Gonçalves

Transient phenomena play a key role in coordinating brain activity at multiple scales, however,their underlying mechanisms remain largely unknown. A key challenge for neural data science is thus to characterize the network interactions at…

Neurons and Cognition · Quantitative Biology 2022-09-16 Kaidi Shao , Nikos K. Logothetis , Michel Besserve

[Background] Several studies have mentioned network modularity -- that a network can easily be decomposed into subgraphs that are densely connected within and weakly connected between each other -- as a factor affecting metabolic…

Molecular Networks · Quantitative Biology 2012-10-10 Petter Holme

Transformers demonstrate impressive performance on a range of reasoning benchmarks. To evaluate the degree to which these abilities are a result of actual reasoning, existing work has focused on developing sophisticated benchmarks for…

Machine Learning · Computer Science 2024-07-02 Jannik Brinkmann , Abhay Sheshadri , Victor Levoso , Paul Swoboda , Christian Bartelt

We present a study investigating the role of mitochondrial variability in generating noise in eukaryotic cells. Noise in cellular physiology plays an important role in many fundamental cellular processes, including transcription,…

Cell Behavior · Quantitative Biology 2015-05-28 Iain G. Johnston , Bernadett Gaal , Ricardo Pires das Neves , Tariq Enver , Francisco J. Iborra , Nick S. Jones

From numerical simulations it is known that the barrier-crossing time of a non-Markovian one-dimensional reaction coordinate with a single exponentially decaying memory function exhibits a memory-turnover: for intermediate values of the…

Statistical Mechanics · Physics 2026-01-16 Roland R. Netz

In this work we present and discuss theoretical models of redox molecular junctions that account for recent observations of nonlinear charge transport phenomena, such as hysteresis and hysteretic negative differential resistance (NDR). A…

Mesoscale and Nanoscale Physics · Physics 2013-06-21 Agostino Migliore , Abraham Nitzan

We present a simple framework for classical and quantum ``memory'' in which the Hamiltonian at time $t$ depends on past values of a control Hamiltonian through a causal kernel. This structure naturally describes finite-bandwidth or filtered…

Quantum Physics · Physics 2026-01-29 Francesco Caravelli

Neuronal activity arises from an interaction between ongoing firing generated spontaneously by neural circuits and responses driven by external stimuli. Using mean-field analysis, we ask how a neural network that intrinsically generates…

Neurons and Cognition · Quantitative Biology 2010-08-04 Kanaka Rajan , L F Abbott , Haim Sompolinsky

We consider a new class of non Markovian processes with a countable number of interacting components. At each time unit, each component can take two values, indicating if it has a spike or not at this precise moment. The system evolves as…

Probability · Mathematics 2015-06-12 Antonio Galves , Eva Löcherbach
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