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The application of network techniques to the analysis of neural data has greatly improved our ability to quantify and describe these rich interacting systems. Among many important contributions, networks have proven useful in identifying…

Quantitative Methods · Quantitative Biology 2018-06-14 Ann E. Sizemore , Jennifer Phillips-Cremins , Robert Ghrist , Danielle S. Bassett

Embedding a network in hyperbolic space can reveal interesting features for the network structure, especially in terms of self-similar characteristics. The hidden metric space, which can be thought of as the underlying structure of the…

Topological data analysis can reveal higher-order structure beyond pairwise connections between vertices in complex networks. We present a new method based on discrete Morse theory to study topological properties of unweighted and…

Discrete Mathematics · Computer Science 2019-10-01 Harish Kannan , Emil Saucan , Indrava Roy , Areejit Samal

A network can be analyzed at different topological scales, ranging from single nodes to motifs, communities, up to the complete structure. We propose a novel intermediate-level topological analysis that considers non-overlapping subgraphs…

Computational Physics · Physics 2009-11-13 Lucas Antiqueira , Luciano da Fontoura Costa

Community is a common characteristic of networks including social networks, biological networks, computer and information networks, to name a few. Community detection is a basic step for exploring and analysing these network data.…

Machine Learning · Computer Science 2020-04-07 Maoying Qiao , Jun Yu , Wei Bian , Dacheng Tao

We introduce and explore a new method for inferring hidden geometric coordinates of nodes in complex networks based on the number of common neighbors between the nodes. We compare this approach to the HyperMap method, which is based only on…

Social and Information Networks · Computer Science 2015-08-21 Fragkiskos Papadopoulos , Rodrigo Aldecoa , Dmitri Krioukov

The study of complex networks has significantly advanced our understanding of community structures which serves as a crucial feature of real-world graphs. Detecting communities in graphs is a challenging problem with applications in…

Social and Information Networks · Computer Science 2024-07-15 Jiakang Li , Songning Lai , Zhihao Shuai , Yuan Tan , Yifan Jia , Mianyang Yu , Zichen Song , Xiaokang Peng , Ziyang Xu , Yongxin Ni , Haifeng Qiu , Jiayu Yang , Yutong Liu , Yonggang Lu

Many real world systems or web services can be represented as a network such as social networks and transportation networks. In the past decade, many algorithms have been developed to detect the communities in a network using connections…

Social and Information Networks · Computer Science 2015-01-21 Zhi Liu , Yan Huang

Many community detection algorithms require the introduction of a measure on the set of nodes. Previously, a lot of efforts have been made to find the top-performing measures. In most cases, experiments were conducted on several datasets or…

Social and Information Networks · Computer Science 2021-11-03 Rinat Aynulin

In topological data analysis, persistent homology is used to study the "shape of data". Persistent homology computations are completely characterized by a set of intervals called a bar code. It is often said that the long intervals…

Computational Geometry · Computer Science 2025-02-19 Peter Bubenik , Michael Hull , Dhruv Patel , Benjamin Whittle

Topological properties of networks are widely applied to study the link-prediction problem recently. Common Neighbors, for example, is a natural yet efficient framework. Many variants of Common Neighbors have been thus proposed to further…

Social and Information Networks · Computer Science 2014-09-18 Fei Tan , Yongxiang Xia , Boyao Zhu

Despite the tremendous success of graph-based learning systems in handling structural data, it has been widely investigated that they are fragile to adversarial attacks on homophilic graph data, where adversaries maliciously modify the…

Machine Learning · Computer Science 2025-09-05 Yulin Zhu , Yuni Lai , Xing Ai , Wai Lun LO , Gaolei Li , Jianhua Li , Di Tang , Xingxing Zhang , Mengpei Yang , Kai Zhou

Persistent homology is a technique recently developed in algebraic and computational topology well-suited to analysing structure in complex, high-dimensional data. In this paper, we exposit the theory of persistent homology from first…

Applications · Statistics 2016-11-30 Matthew Pietrosanu

Community detection refers to the problem of clustering the nodes of a network (either graph or hypergrah) into groups. Various algorithms are available for community detection and all these methods apply to uncensored networks. In…

Machine Learning · Statistics 2021-11-08 Mingao Yuan , Bin Zhao , Xiaofeng Zhao

With the emergence of graph databases, the task of frequent subgraph discovery has been extensively addressed. Although the proposed approaches in the literature have made this task feasible, the number of discovered frequent subgraphs is…

Databases · Computer Science 2013-08-16 Wajdi Dhifli , Mohamed Moussaoui , Rabie Saidi , Engelbert Mephu Nguifo

In a world abundant with diverse data arising from complex acquisition techniques, there is a growing need for new data analysis methods. In this paper we focus on high-dimensional data that are organized into several hierarchical datasets.…

Machine Learning · Computer Science 2021-04-06 Lior Aloni , Omer Bobrowski , Ronen Talmon

A large driver of the complexity of graph learning is the interplay between structure and features. When analyzing the expressivity of graph neural networks, however, existing approaches ignore features in favor of structure, making it…

Machine Learning · Computer Science 2026-03-04 Martin Carrasco , Olga Zaghen , Kavir Sumaraj , Erik Bekkers , Bastian Rieck

In this paper, we propose a method that extends the persistence-based topological data analysis (TDA) that is typically used for characterizing shapes to general networks. We introduce the concept of the community tree, a tree structure…

Social and Information Networks · Computer Science 2022-04-08 Wei Guo , Ruqian Chen , Yen-Chi Chen , Ashis G. Banerjee

Understanding the structure of high-dimensional data is fundamental to neuroscience and other data-intensive scientific fields. While persistent homology effectively identifies basic topological features such as "holes," it lacks the…

Algebraic Topology · Mathematics 2025-07-16 Ekaterina S. Ivshina , Galit Anikeeva , Ling Zhou

Hypergraphs are mathematical models for many problems in data sciences. In recent decades, the topological properties of hypergraphs have been studied and various kinds of (co)homologies have been constructed (cf. [3, 4, 12]). In this…

Algebraic Topology · Mathematics 2018-03-15 Stephane Bressan , Jingyan Li , Shiquan Ren , Jie Wu
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