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The search for pathways that optimize the formation of a particular target molecule in a reaction network is a key problem in many settings, including reactor systems. Chemical reaction networks are mathematically well represented as…

Molecular Networks · Quantitative Biology 2025-06-17 Adittya Pal , Rolf Fagerberg , Jakob Lykke Andersen , Christoph Flamm , Peter Dittrich , Daniel Merkle

Toxicity analysis and prediction are of paramount importance to human health and environmental protection. Existing computational methods are built from a wide variety of descriptors and regressors, which makes their performance analysis…

Quantitative Methods · Quantitative Biology 2017-04-03 Kedi Wu , Guo-Wei Wei

Deep neural networks (DNNs) have been found to be vulnerable to backdoor attacks, raising security concerns about their deployment in mission-critical applications. While existing defense methods have demonstrated promising results, it is…

Machine Learning · Computer Science 2023-12-11 Yige Li , Xixiang Lyu , Xingjun Ma , Nodens Koren , Lingjuan Lyu , Bo Li , Yu-Gang Jiang

Deep neural networks (DNN) have revolutionized the field of natural language processing (NLP). Convolutional neural network (CNN) and recurrent neural network (RNN), the two main types of DNN architectures, are widely explored to handle…

Computation and Language · Computer Science 2017-02-08 Wenpeng Yin , Katharina Kann , Mo Yu , Hinrich Schütze

This paper presents a detailed comparison between 3 methods for emulating CPU-intensive reactive transport models (RTMs): Gaussian processes (GPs), polynomial chaos expansion (PCE) and deep neural networks (DNNs). Besides direct emulation…

Computational Physics · Physics 2019-07-02 Eric Laloy , Diederik Jacques

Despite great advances, molecular cancer pathology is often limited to the use of a small number of biomarkers rather than the whole transcriptome, partly due to computational challenges. Here, we introduce a novel architecture of Deep…

Machine Learning · Statistics 2019-08-14 Behrooz Azarkhalili , Ali Saberi , Hamidreza Chitsaz , Ali Sharifi-Zarchi

Low-dose CT imaging requires reconstruction from noisy indirect measurements which can be defined as an ill-posed linear inverse problem. In addition to conventional FBP method in CT imaging, recent compressed sensing based methods exploit…

Image and Video Processing · Electrical Eng. & Systems 2025-11-14 Mehmet Ozan Unal , Metin Ertas , Isa Yildirim

We present a novel interpretable machine learning model to accurately predict complex rippling deformations of Multi-Walled Carbon Nanotubes(MWCNTs) made of millions of atoms. Atomistic-physics-based models are accurate but computationally…

Computational Physics · Physics 2021-01-20 Upendra yadav , Shashank Pathrudkar , Susanta Ghosh

The most deadly and life-threatening disease in the world is lung cancer. Though early diagnosis and accurate treatment are necessary for lowering the lung cancer mortality rate. A computerized tomography (CT) scan-based image is one of the…

Image and Video Processing · Electrical Eng. & Systems 2023-04-12 Muntasir Mamun , Md Ishtyaq Mahmud , Mahabuba Meherin , Ahmed Abdelgawad

Sampling-based path planning algorithms suffer from heavy reliance on uniform sampling, which accounts for unreliable and time-consuming performance, especially in complex environments. Recently, neural-network-driven methods predict…

Robotics · Computer Science 2023-08-17 Yuan Huang , Cheng-Tien Tsao , Tianyu Shen , Hee-Hyol Lee

Scheduling flexible sources to promote the integration of renewable generation is one fundamental problem for operating active distribution networks (ADNs). However, existing works are usually based on power flow models, which require…

Optimization and Control · Mathematics 2022-08-09 Ge Chen , Hongcai Zhang , Yonghua Song

Normalization has become one of the most fundamental components in many deep neural networks for machine learning tasks while deep neural network has also been widely used in CTR estimation field. Among most of the proposed deep neural…

Machine Learning · Computer Science 2020-07-08 Zhiqiang Wang , Qingyun She , PengTao Zhang , Junlin Zhang

The physics reach of the HL-LHC will be limited by how efficiently the experiments can use the available computing resources, i.e. affordable software and computing are essential. The development of novel methods for charged particle…

Instrumentation and Detectors · Physics 2021-09-08 Catherine Biscarat , Sylvain Caillou , Charline Rougier , Jan Stark , Jad Zahreddine

We consider the problem of link prediction in networks whose edge structure may vary (sufficiently slowly) over time. This problem, with applications in many important areas including social networks, has two main variants: the first, known…

Optimization and Control · Mathematics 2020-04-30 Daniele Alpago , Mattia Zorzi , Augusto Ferrante

Graph convolutional networks (GCNs) are nowadays becoming mainstream in solving many image processing tasks including skeleton-based recognition. Their general recipe consists in learning convolutional and attention layers that maximize…

Computer Vision and Pattern Recognition · Computer Science 2023-06-01 Hichem Sahbi

Sparsity is a highly desired feature in deep neural networks (DNNs) since it ensures numerical efficiency, improves the interpretability of models (due to the smaller number of relevant features), and robustness. For linear models, it is…

Machine Learning · Computer Science 2024-04-01 Augustina C. Amakor , Konstantin Sonntag , Sebastian Peitz

In recent years, machine learning interatomic potentials (MLIPs) have attracted significant attention as a method that enables large-scale, long-time atomistic simulations while maintaining accuracy comparable to electronic structure…

Materials Science · Physics 2025-03-27 Yuta Yoshimoto , Naoki Matsumura , Yuto Iwasaki , Hiroshi Nakao , Yasufumi Sakai

Machine-learned interatomic potentials (MLPs) provide near density functional theory (DFT) accuracy at reduced computational cost, but their reliability depends on representative training data and often deteriorates in transition-state…

Chemical Physics · Physics 2026-05-06 Ashique Lal , Rik S. Breebaart , Peter G. Bolhuis , Evert Jan Meijer

Molecular dynamics (MD) simulation, which is considered an important tool for studying physical and chemical processes at the atomic scale, requires accurate calculations of energies and forces. Although reliable energies and forces can be…

Materials Science · Physics 2021-12-06 Van-Quyen Nguyen , Viet-Cuong Nguyen , Tien-Cuong Nguyen , Tien-Lam Pham

Background and Purpose: Convolutional neural network is widely used for image recognition in the medical area at nowadays. However, overall accuracy in predicting lung tumor is low and the processing time is high as the error occurred while…

Image and Video Processing · Electrical Eng. & Systems 2022-08-15 Bhoj Raj Pandit , Abeer Alsadoon , P. W. C. Prasad , Sarmad Al Aloussi , Tarik A. Rashid , Omar Hisham Alsadoon , Oday D. Jerew
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