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The Common Workflow Language (CWL) is a widely adopted language for defining and sharing computational workflows. It is designed to be independent of the execution engine on which workflows are executed. In this paper, we describe our…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-12 Nishchay Karle , Ben Clifford , Yadu Babuji , Ryan Chard , Daniel S. Katz , Kyle Chard

Computational Workflows are widely used in data analysis, enabling innovation and decision-making. In many domains (bioinformatics, image analysis, & radio astronomy) the analysis components are numerous and written in multiple different…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-05-24 Michael R. Crusoe , Sanne Abeln , Alexandru Iosup , Peter Amstutz , John Chilton , Nebojša Tijanić , Hervé Ménager , Stian Soiland-Reyes , Bogdan Gavrilovic , Carole Goble

Data streams are a sequence of data flowing between source and destination processes. Streaming is widely used for signal, image and video processing for its efficiency in pipelining and effectiveness in reducing demand for memory. The goal…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-08-07 Ivy Bo Peng , Stefano Markidis , Roberto Gioiosa , Gokcen Kestor , Erwin Laure

New trends towards multiple core processors imply using standard programming models to develop efficient, reliable and portable programs for distributed memory multiprocessors and workstation PC clusters. Message passing using MPI is widely…

Programming Languages · Computer Science 2013-11-05 Alaa I. Elnashar

Runtime scheduling and workflow systems are an increasingly popular algorithmic component in HPC because they allow full system utilization with relaxed synchronization requirements. There are so many special-purpose tools for task…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-11-03 David M. Rogers

Heterogeneous scientific workflows consist of numerous types of tasks that require executing on heterogeneous resources. Asynchronous execution of those tasks is crucial to improve resource utilization, task throughput and reduce workflows'…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-06-28 Vincent R. Pascuzzi , Ozgur O. Kilic , Matteo Turilli , Shantenu Jha

We present a simple and easy to apply methodology for using high-level self-submitting parallel job queues in an MPI environment. Using C++, we implemented a library of functions, MPQueue, both for testing our concepts and for use in real…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-04-23 John M. Neuberger , Nandor Sieben , James W. Swift

Software developers must adapt to keep up with the changing capabilities of platforms so that they can utilize the power of High- Performance Computers (HPC), including exascale systems. OpenMP, a directive-based parallel programming model,…

The progression of communication in the Message Passing Interface (MPI) is not well defined, yet it is critical for application performance, particularly in achieving effective computation and communication overlap. The opaque nature of MPI…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-16 Hui Zhou , Robert Latham , Ken Raffenetti , Yanfei Guo , Rajeev Thakur

Message Passing Interface (MPI) is a foundational programming model for high-performance computing. MPI libraries traditionally employ network interconnects (e.g., Ethernet and InfiniBand) and network protocols (e.g., TCP and RoCE) with…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-12-16 Xi Wang , Bin Ma , Jongryool Kim , Byungil Koh , Hoshik Kim , Dong Li

We discuss the use of both MPI and OpenMP in the teaching of senior undergraduate and junior graduate classes in parallel programming. We briefly introduce the OpenMP standard and discuss why we have chosen to use it in parallel programming…

Distributed, Parallel, and Cluster Computing · Computer Science 2007-05-23 Yi Pan

Comprehending the performance bottlenecks at the core of the intricate hardware-software interactions exhibited by highly parallel programs on HPC clusters is crucial. This paper sheds light on the issue of automatically asynchronous MPI…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-06 Ayesha Afzal , Georg Hager , Stefano Markidis , Gerhard Wellein

MatlabMPI is a Matlab implementation of the Message Passing Interface (MPI) standard and allows any Matlab program to exploit multiple processors. MatlabMPI currently implements the basic six functions that are the core of the MPI…

Astrophysics · Physics 2007-05-23 Jeremy Kepner

Composability is one of seven reasons for the long-standing and continuing success of MPI. Extending MPI by composing its operations with user-level operations provides useful integration with the progress engine and completion notification…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-27 Derek Schafer , Sheikh Ghafoor , Daniel Holmes , Martin Ruefenacht , Anthony Skjellum

The Message Passing Interface (MPI) is the prevalent programming model used on today's supercomputers. Therefore, MPI library developers are looking for the best possible performance (shortest run-time) of individual MPI functions across…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-05-30 Sascha Hunold , Alexandra Carpen-Amarie

Parallel programming remains a daunting challenge, from the struggle to express a parallel algorithm without cluttering the underlying synchronous logic, to describing which devices to employ in a calculation, to correctness. Over the…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-10 Patrick Diehl , Steven R. Brandt , Hartmut Kaiser

The Message Passing Interface (MPI) is the most commonly used application programming interface for process communication on current large-scale parallel systems. Due to the scale and complexity of modern parallel architectures, it is…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-09-05 Sascha Hunold , Alexandra Carpen-Amarie , Felix Donatus Lübbe , Jesper Larsson Träff

MPI is the most widely used interface for high-performance computing (HPC) workloads. Its success lies in its embrace of libraries and ability to evolve while maintaining backward compatibility for older codes, enabling them to run on new…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-23 Jeff R. Hammond , Lisandro Dalcin , Erik Schnetter , Marc Pérache , Jean-Baptiste Besnard , Jed Brown , Gonzalo Brito Gadeschi , Joseph Schuchart , Simon Byrne , Hui Zhou

As Machine Learning (ML) gains adoption across industries and new use cases, practitioners increasingly realize the challenges around effectively developing and iterating on ML systems: reproducibility, debugging, scalability, and…

Machine Learning · Computer Science 2023-03-22 Jacopo Tagliabue , Hugo Bowne-Anderson , Ville Tuulos , Savin Goyal , Romain Cledat , David Berg

The recent development of large language models (LLMs) with multi-billion parameters, coupled with the creation of user-friendly application programming interfaces (APIs), has paved the way for automatically generating and executing code in…

Artificial Intelligence · Computer Science 2023-12-14 Alejandro Duque , Abdullah Syed , Kastan V. Day , Matthew J. Berry , Daniel S. Katz , Volodymyr V. Kindratenko
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