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In supervised learning, understanding an input's proximity to the training data can help a model decide whether it has sufficient evidence for reaching a reliable prediction. While powerful probabilistic models such as Gaussian Processes…

Machine Learning · Computer Science 2024-06-19 Ifigeneia Apostolopoulou , Benjamin Eysenbach , Frank Nielsen , Artur Dubrawski

In this paper, we explore how to use topological tools to compare dimension reduction methods. We first make a brief overview of some of the methods often used dimension reduction such as Isometric Feature Mapping, Laplacian Eigenmaps, Fast…

Geometric Topology · Mathematics 2023-06-06 Eddy Kwessi

Zigzag persistent homology is a powerful generalisation of persistent homology that allows one not only to compute persistence diagrams with less noise and using less memory, but also to use persistence in new fields of application.…

Computational Geometry · Computer Science 2016-08-23 Clément Maria , Steve Oudot

In the field of topological data analysis, persistence modules are used to express geometrical features of data sets. The matching distance $d_\mathcal{M}$ measures the difference between $2$-parameter persistence modules by taking the…

Algebraic Topology · Mathematics 2023-12-08 Håvard Bakke Bjerkevik , Michael Kerber

Detecting the dimensionality of graphs is a central topic in machine learning. While the problem has been tackled empirically as well as theoretically, existing methods have several drawbacks. On the one hand, empirical tools are…

Social and Information Networks · Computer Science 2024-08-16 Tobias Friedrich , Andreas Göbel , Maximilian Katzmann , Leon Schiller

Exploiting geometric structure to improve the asymptotic complexity of discrete assignment problems is a well-studied subject. In contrast, the practical advantages of using geometry for such problems have not been explored. We implement…

Computational Geometry · Computer Science 2016-06-13 Michael Kerber , Dmitriy Morozov , Arnur Nigmetov

Persistence diagrams are a useful tool from topological data analysis which can be used to provide a concise description of a filtered topological space. What makes them even more useful in practice is that they come with a notion of a…

Computational Geometry · Computer Science 2018-11-05 Jesse J. Berwald , Joel M. Gottlieb , Elizabeth Munch

We redevelop persistent homology (topological persistence) from a categorical point of view. The main objects of study are diagrams, indexed by the poset of real numbers, in some target category. The set of such diagrams has an interleaving…

Algebraic Topology · Mathematics 2014-05-13 Peter Bubenik , Jonathan A. Scott

Efficient deep learning traditionally relies on static heuristics like weight magnitude or activation awareness (e.g., Wanda, RIA). While successful in unstructured settings, we observe a critical limitation when applying these metrics to…

Computer Vision and Pattern Recognition · Computer Science 2026-03-18 Tianhao Qian , Zhuoxuan Li , Jinde Cao , Xinli Shi , Leszek Rutkowski

Distances are pervasive in machine learning. They serve as similarity measures, loss functions, and learning targets; it is said that a good distance measure solves a task. When defining distances, the triangle inequality has proven to be a…

Machine Learning · Computer Science 2020-07-08 Silviu Pitis , Harris Chan , Kiarash Jamali , Jimmy Ba

The biharmonic distance is a fundamental metric on graphs that measures the dissimilarity between two nodes, capturing both local and global structures. It has found applications across various fields, including network centrality, graph…

Social and Information Networks · Computer Science 2026-01-16 Dehong Zheng , Zhongzhi Zhang

As a pixel-level prediction task, semantic segmentation needs large computational cost with enormous parameters to obtain high performance. Recently, due to the increasing demand for autonomous systems and robots, it is significant to make…

Computer Vision and Pattern Recognition · Computer Science 2019-10-02 Gen Li , Inyoung Yun , Jonghyun Kim , Joongkyu Kim

0-dimensional persistent homology is known, from a computational point of view, as the easy case. Indeed, given a list of $n$ edges in non-decreasing order of filtration value, one only needs a union-find data structure to keep track of the…

Computational Geometry · Computer Science 2023-12-12 Marc Glisse

Persistence diagrams are important tools in the field of topological data analysis that describe the presence and magnitude of features in a filtered topological space. However, current approaches for comparing a persistence diagram to a…

Computational Geometry · Computer Science 2021-03-24 Brittany Terese Fasy , Xiaozhou He , Zhihui Liu , Samuel Micka , David L. Millman , Binhai Zhu

Analyzing high-dimensional data with manifold learning algorithms often requires searching for the nearest neighbors of all observations. This presents a computational bottleneck in statistical manifold learning when observations of…

Machine Learning · Computer Science 2022-03-11 Fan Cheng , Anastasios Panagiotelis , Rob J Hyndman

We introduce a logic called distance neighborhood logic with acyclicity and connectivity constraints ($\mathsf{A\&C~DN}$ for short) which extends existential $\mathsf{MSO_1}$ with predicates for querying neighborhoods of vertex sets and for…

Data Structures and Algorithms · Computer Science 2022-12-09 Benjamin Bergougnoux , Jan Dreier , Lars Jaffke

Distance measures play an important role in shape classification and data analysis problems. Topological distances based on Reeb graphs and persistence diagrams have been employed to obtain effective algorithms in shape matching and scalar…

Machine Learning · Computer Science 2023-03-07 Yashwanth Ramamurthi , Amit Chattopadhyay

Graph partitioning schedules parallel calculations like sparse matrix-vector multiply (SpMV). We consider contiguous partitions, where the $m$ rows (or columns) of a sparse matrix with $N$ nonzeros are split into $K$ parts without…

Data Structures and Algorithms · Computer Science 2024-10-30 Willow Ahrens

Large language models (LLMs) have emerged as powerful tools for automatic algorithm design (AAD). However, existing pipelines remain inefficient. They operate at the granularity of full algorithms, redundantly rewriting recurring…

Artificial Intelligence · Computer Science 2026-05-12 Maxime Bouscary , Manxi Wu , Saurabh Amin

We build a functorial pipeline for persistent homology. The input to this pipeline is a filtered simplicial complex indexed by any finite metric lattice and the output is a persistence diagram defined as the M\"obius inversion of its…

Algebraic Topology · Mathematics 2024-08-29 Alexander McCleary , Amit Patel