Related papers: A package for computations with sparse resultants
Gaussian Markov random fields are used in a large number of disciplines in machine vision and spatial statistics. The models take advantage of sparsity in matrices introduced through the Markov assumptions, and all operations in inference…
We give a new theoretical tool to solve sparse systems with finitely many solutions. It is based on toric varieties and basic linear algebra; eigenvalues, eigenvectors and coefficient matrices. We adapt Eigenvalue theorem and Eigenvector…
The study of reaction times and their underlying cognitive processes is an important field in Psychology. Reaction times are usually modeled through the ex-Gaussian distribution, because it provides a good fit to multiple empirical data.…
It is shown how to set up, conduct, and analyze large simulation studies with the new R package simsalapar = simulations simplified and launched parallel. A simulation study typically starts with determining a collection of input variables…
Pseudoinverses are ubiquitous tools for handling over- and under-determined systems of equations. For computational efficiency, sparse pseudoinverses are desirable. Recently, sparse left and right pseudoinverses were introduced, using…
We consider a novel Bayesian approach to estimation, uncertainty quantification, and variable selection for a high-dimensional linear regression model under sparsity. The number of predictors can be nearly exponentially large relative to…
We report on a package of routines for the computer algebra system Maple which supports the explicit determination of the geometric quantities, field equations, equations of motion, and conserved quantities of General Relativity in the…
The matrixdist R package provides a comprehensive suite of tools for the statistical analysis of matrix distributions, including phase-type, inhomogeneous phase-type, discrete phase-type, and related multivariate distributions. This paper…
We explain a Macaulay2 implementation of a construction, which appeared in [Holweck-Oeding arXiv:2206.13662], of a graded algebra structure on the direct sum of a Lie algebra $\mathfrak{g}$ (typically $\mathfrak{sl}_n$) and a…
We present the $\textit{NumericalImplicitization}$ package for $\textit{Macaulay2}$, which allows for user-friendly computation of the invariants of the image of a polynomial map, such as dimension, degree, and Hilbert function values. This…
We introduce the AdditiveToricVarieties package for Macaulay2, a software system for algebraic geometry and commutative algebra, with methods for working with additive group actions on complete toric varieties. More precisely, we implement…
This article presents the MAGI software package for the inference of dynamic systems. The focus of MAGI is on dynamics modeled by nonlinear ordinary differential equations with unknown parameters. While such models are widely used in…
This paper introduces the R package BayesVarSel which implements objective Bayesian methodology for hypothesis testing and variable selection in linear models. The package computes posterior probabilities of the competing hypotheses/models…
SOFTSUSY is a program which accurately calculates the spectrum of superparticles in the CP-conserving Minimal Supersymmetric Standard Model (MSSM), with a full flavour mixing structure. The program solves the renormalisation group equations…
Dense and sparse tensors allow the representation of most bulk data structures in computational science applications. We show that sparse tensor algebra can also be used to express many of the transformations on these datasets, especially…
Numerical Algebraic Geometry uses numerical data to describe algebraic varieties. It is based on the methods of numerical polynomial homotopy continuation, an alternative to the classical symbolic approaches of computational algebraic…
We introduce c-lasso, a Python package that enables sparse and robust linear regression and classification with linear equality constraints. The underlying statistical forward model is assumed to be of the following form: \[ y = X \beta +…
This paper introduces the sparse functional boxplot and the intensity sparse functional boxplot as practical exploratory tools. Besides being available for complete functional data, they can be used in sparse univariate and multivariate…
This article summarizes new features and enhancements of the first major update of Package-X. Package-X 2.0 can now generate analytic expressions for arbitrarily high rank dimensionally regulated tensor integrals with up to four distinct…
The INLA package provides a tool for computationally efficient Bayesian modeling and inference for various widely used models, more formally the class of latent Gaussian models. It is a non-sampling based framework which provides…