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Graph-based machine learning methods are useful tools in the identification and prediction of variation in genetic data. In particular, the comprehension of phenotypic effects at the cellular level is an accelerating research area in…

Quantitative Methods · Quantitative Biology 2024-12-06 Nandini Gadhia , Michalis Smyrnakis , Po-Yu Liu , Damer Blake , Melanie Hay , Anh Nguyen , Dominic Richards , Dong Xia , Ritesh Krishna

We propose a new multi-network-based strategy to integrate different layers of genomic information and use them in a coordinate way to identify driving cancer genes. The multi-networks that we consider combine transcription factor…

Molecular Networks · Quantitative Biology 2015-12-10 Laura Cantini , Enzo Medico , Santo Fortunato , Michele Caselle

Community detection using both graphs and social networks is the focus of many algorithms. Recent methods aimed at optimizing the so-called modularity function proceed by maximizing relations within communities while minimizing…

Social and Information Networks · Computer Science 2014-06-27 Michel Crampes , Michel Plantié

Approximate nearest neighbor search (ANNS) constitutes an important operation in a multitude of applications, including recommendation systems, information retrieval, and pattern recognition. In the past decade, graph-based ANNS algorithms…

Information Retrieval · Computer Science 2021-05-11 Mengzhao Wang , Xiaoliang Xu , Qiang Yue , Yuxiang Wang

This paper looks at the task of network topology inference, where the goal is to learn an unknown graph from nodal observations. One of the novelties of the approach put forth is the consideration of prior information about the density of…

Signal Processing · Electrical Eng. & Systems 2022-07-12 Samuel Rey , T. Mitchell Roddenberry , Santiago Segarra , Antonio G. Marques

Network analysis has played a key role in knowledge discovery and data mining. In many real-world applications in recent years, we are interested in mining multilayer networks, where we have a number of edge sets called layers, which encode…

Social and Information Networks · Computer Science 2022-11-08 Yasushi Kawase , Atsushi Miyauchi , Hanna Sumita

In practical optimisation the dominant characteristics of the problem are often not known prior. Therefore, there is a need to develop general solvers as it is not always possible to tailor a specialised approach to each application. The…

Neural and Evolutionary Computing · Computer Science 2021-04-23 P. A. Grudniewski , A. J. Sobey

We wish to minimize the resources used for network coding while achieving the desired throughput in a multicast scenario. We employ evolutionary approaches, based on a genetic algorithm, that avoid the computational complexity that makes…

Networking and Internet Architecture · Computer Science 2016-11-15 Minkyu Kim , Muriel Medard , Varun Aggarwal , Una-May O'Reilly , Wonsik Kim , Chang Wook Ahn , Michelle Effros

Many optimization problems in science and engineering are highly nonlinear, and thus require sophisticated optimization techniques to solve. Traditional techniques such as gradient-based algorithms are mostly local search methods, and often…

Neural and Evolutionary Computing · Computer Science 2019-03-28 Xin-She Yang , Suash Deb , Sudhanshu K Mishra

Co-exploitation attacks on software vulnerabilities pose severe risks to enterprises, a threat that can be mitigated by analyzing heterogeneous and multimodal vulnerability data. Multimodal graph neural networks (MGNNs) are well-suited to…

Machine Learning · Computer Science 2025-10-10 Sixuan Wang , Jiao Yin , Jinli Cao , Mingjian Tang , Yong-Feng Ge

Community detection is a discovery tool used by network scientists to analyze the structure of real-world networks. It seeks to identify natural divisions that may exist in the input networks that partition the vertices into coherent…

Social and Information Networks · Computer Science 2019-09-24 Neda Zarayeneh , Ananth Kalyanaraman

This study addresses the challenge of accurately identifying multi-task contention types in high-dimensional system environments and proposes a unified contention classification framework that integrates representation transformation,…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-29 Xiao Yang , Yinan Ni , Yuqi Tang , Zhimin Qiu , Chen Wang , Tingzhou Yuan

In many real-world problems and applications, finding only a single element, even though the best, among all possible candidates, cannot fully meet the requirements. We may wish to have a collection where each individual is not only…

Neural and Evolutionary Computing · Computer Science 2024-04-17 Jiongzhi Zheng , Jinghui Xue , Kun He , Chu-Min Li , Yanli Liu

The multi-task learning (MTL) paradigm can be traced back to an early paper of Caruana (1997) in which it was argued that data from multiple tasks can be used with the aim to obtain a better performance over learning each task…

Machine Learning · Computer Science 2021-12-10 Andrea Ponti

Artificial neural network (NN) architecture design is a nontrivial and time-consuming task that often requires a high level of human expertise. Neural architecture search (NAS) serves to automate the design of NN architectures and has…

Neural and Evolutionary Computing · Computer Science 2024-09-10 Reinhard Booysen , Anna Sergeevna Bosman

Prediction tasks over nodes and edges in networks require careful effort in engineering features used by learning algorithms. Recent research in the broader field of representation learning has led to significant progress in automating…

Social and Information Networks · Computer Science 2016-07-05 Aditya Grover , Jure Leskovec

Now-a-days, it is important to find out solutions of Multi-Objective Optimization Problems (MOPs). Evolutionary Strategy helps to solve such real world problems efficiently and quickly. But sequential Evolutionary Algorithms (EAs) require…

Neural and Evolutionary Computing · Computer Science 2016-11-15 Md. Asadul Islam , G. M. Mashrur-E-Elahi , M. M. A. Hashem

Training Graph Convolutional Networks (GCNs) is expensive as it needs to aggregate data recursively from neighboring nodes. To reduce the computation overhead, previous works have proposed various neighbor sampling methods that estimate the…

Machine Learning · Computer Science 2021-01-20 Peng Jiang , Masuma Akter Rumi

Community detection is one of the most important and interesting issues in social network analysis. In recent years, simultaneous considering of nodes' attributes and topological structures of social networks in the process of community…

Social and Information Networks · Computer Science 2022-12-29 Ali Reihanian , Mohammad-Reza Feizi-Derakhshi , Hadi S. Aghdasi

In this paper, we propose a novel semi-supervised feature selection framework by mining correlations among multiple tasks and apply it to different multimedia applications. Instead of independently computing the importance of features for…

Machine Learning · Computer Science 2017-07-11 Xiaojun Chang , Yi Yang