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Dimensionality reduction techniques are essential for visualizing and analyzing high-dimensional biological sequencing data. t-distributed Stochastic Neighbor Embedding (t-SNE) is widely used for this purpose, traditionally employing the…

Machine Learning · Computer Science 2025-12-19 Avais Jan , Prakash Chourasia , Sarwan Ali , Murray Patterson

We study the relationship between gradient-based optimization of parametric models (e.g., neural networks) and optimization of linear combinations of random features. Our main result shows that if a parametric model can be learned using…

Machine Learning · Computer Science 2025-05-16 Ari Karchmer , Eran Malach

Sparse training is a natural idea to accelerate the training speed of deep neural networks and save the memory usage, especially since large modern neural networks are significantly over-parameterized. However, most of the existing methods…

Machine Learning · Computer Science 2021-11-11 Xiao Zhou , Weizhong Zhang , Zonghao Chen , Shizhe Diao , Tong Zhang

Neural networks, a central tool in machine learning, have demonstrated remarkable, high fidelity performance on image recognition and classification tasks. These successes evince an ability to accurately represent high dimensional…

Machine Learning · Statistics 2023-02-08 Grant M. Rotskoff , Eric Vanden-Eijnden

T-distributed stochastic neighbor embedding (t-SNE) is a well-known algorithm for visualizing high-dimensional data by finding low-dimensional representations. In this paper, we study the convergence of t-SNE with generalized kernels and…

Machine Learning · Statistics 2025-06-10 Yi Gu

When visualizing a high-dimensional dataset, dimension reduction techniques are commonly employed which provide a single 2-dimensional view of the data. We describe ENS-t-SNE: an algorithm for Embedding Neighborhoods Simultaneously that…

Machine Learning · Computer Science 2024-04-02 Jacob Miller , Vahan Huroyan , Raymundo Navarrete , Md Iqbal Hossain , Stephen Kobourov

Non-linear dimensionality reduction can be performed by \textit{manifold learning} approaches, such as Stochastic Neighbour Embedding (SNE), Locally Linear Embedding (LLE) and Isometric Feature Mapping (ISOMAP). These methods aim to produce…

Machine Learning · Statistics 2021-12-09 Theodoulos Rodosthenous , Vahid Shahrezaei , Marina Evangelou

The state-of-the-art deep neural networks (DNNs) have significant computational and data management requirements. The size of both training data and models continue to increase. Sparsification and pruning methods are shown to be effective…

Machine Learning · Computer Science 2021-04-27 Gunduz Vehbi Demirci , Hakan Ferhatosmanoglu

Network embedding, which learns low-dimensional vector representation for nodes in the network, has attracted considerable research attention recently. However, the existing methods are incapable of handling billion-scale networks, because…

Social and Information Networks · Computer Science 2018-09-11 Ziwei Zhang , Peng Cui , Haoyang Li , Xiao Wang , Wenwu Zhu

Dimensional data reduction methods are fundamental to explore and visualize large data sets. Basic requirements for unsupervised data exploration are simplicity, flexibility and scalability. However, current methods show complex…

Machine Learning · Computer Science 2021-12-03 Joan Garriga , Frederic Bartumeus

Neighbor embeddings are a family of methods for visualizing complex high-dimensional datasets using $k$NN graphs. To find the low-dimensional embedding, these algorithms combine an attractive force between neighboring pairs of points with a…

Machine Learning · Computer Science 2024-06-06 Jan Niklas Böhm , Philipp Berens , Dmitry Kobak

Neural networks typically generalize well when fitting the data perfectly, even though they are heavily overparameterized. Many factors have been pointed out as the reason for this phenomenon, including an implicit bias of stochastic…

Machine Learning · Computer Science 2025-02-04 Amit Peleg , Matthias Hein

Gradient clipping is a standard safeguard for training neural networks under noisy, heavy-tailed stochastic gradients; yet, most clipping rules treat all parameters as vectors and ignore the matrix structure of modern architectures. We show…

Machine Learning · Computer Science 2026-05-13 Alexander Yukhimchuk , Mladen Kolar , Martin Takáč , Sayantan Choudhury

We propose two new techniques for training Generative Adversarial Networks (GANs). Our objectives are to alleviate mode collapse in GAN and improve the quality of the generated samples. First, we propose neighbor embedding, a manifold…

Computer Vision and Pattern Recognition · Computer Science 2018-11-06 Ngoc-Trung Tran , Tuan-Anh Bui , Ngai-Man Cheung

Recent advancements in discrete image generation showed that scaling the VQ codebook size significantly improves reconstruction fidelity. However, training generative models with a large VQ codebook remains challenging, typically requiring…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Shufan Li , Jiuxiang Gu , Kangning Liu , Zhe Lin , Aditya Grover , Jason Kuen

Neighbour embeddings (NE) allow the representation of high dimensional datasets into lower dimensional spaces and are often used in data visualisation. In practice, accelerated approximations are employed to handle very large datasets.…

Machine Learning · Computer Science 2025-09-10 Pierre Lambert , Edouard Couplet , Michel Verleysen , John Aldo Lee

Finding parameters in a deep neural network (NN) that fit training data is a nonconvex optimization problem, but a basic first-order optimization method (gradient descent) finds a global optimizer with perfect fit (zero-loss) in many…

Machine Learning · Computer Science 2025-03-07 Zhiyan Ding , Shi Chen , Qin Li , Stephen Wright

T-SNE is a well-known approach to embedding high-dimensional data and has been widely used in data visualization. The basic assumption of t-SNE is that the data are non-constrained in the Euclidean space and the local proximity can be…

Machine Learning · Computer Science 2015-08-06 Mian Wang , Dong Wang

Deep learning models are increasingly popular in many machine learning applications where the training data may contain sensitive information. To provide formal and rigorous privacy guarantee, many learning systems now incorporate…

Machine Learning · Computer Science 2021-03-19 Xiangyi Chen , Zhiwei Steven Wu , Mingyi Hong

Network representation learning, as an approach to learn low dimensional representations of vertices, has attracted considerable research attention recently. It has been proven extremely useful in many machine learning tasks over large…

Machine Learning · Computer Science 2019-06-11 Hao Peng , Jianxin Li , Hao Yan , Qiran Gong , Senzhang Wang , Lin Liu , Lihong Wang , Xiang Ren