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The morphology of defects formed in collision cascades is an essential aspect of the subsequent evolution of the microstructure. The morphological composition of a defect decides its stability, interaction, and migration properties. We…

Materials Science · Physics 2023-11-06 Utkarsh Bhardwaj , Andrea E. Sand , Manoj Warrier

The structure of defect clusters formed in a displacement cascade plays a significant role in the micro-structural evolution during irradiation. Molecular dynamics simulations have been widely used to study collision cascades and subsequent…

Computational Physics · Physics 2024-02-02 Utkarsh Bhardwaj , Andrea E. Sand , Manoj Warrier

We present a graph theory-based method to characterise flow defects and structural shifts in condensed matter. We explore the connection between dynamical properties, particularly the recently introduced concept of ''softness'', and…

Disordered Systems and Neural Networks · Physics 2024-08-13 An Wang , Gabriele C. Sosso

Graphene's intrinsically corrugated and wrinkled topology fundamentally influences its electronic, mechanical, and chemical properties. Experimental techniques allow the manipulation of pristine graphene and the controlled production of…

Materials Science · Physics 2025-09-09 Fabian L. Thiemann , Patrick Rowe , Andrea Zen , Erich A. Müller , Angelos Michaelides

Higher-order connectivity patterns such as small induced sub-graphs called graphlets (network motifs) are vital to understand the important components (modules/functional units) governing the configuration and behavior of complex networks.…

Social and Information Networks · Computer Science 2020-09-15 Aldo G. Carranza , Ryan A. Rossi , Anup Rao , Eunyee Koh

The analysis of defects and defect dynamics in crystalline materials is important for fundamental science and for a wide range of applied engineering. With increasing system size the analysis of molecular-dynamics simulation data becomes…

Computational Physics · Physics 2020-04-20 U. von Toussaint , F. J. Dominguez-Gutierrez , M. Compostella , M. Rampp

Many standard structural quantities, such as order parameters and correlation functions, exist for common condensed matter systems, such as spherical and rod-like particles. However, these structural quantities are often insufficient for…

Soft Condensed Matter · Physics 2012-01-18 Aaron S. Keys , Christopher R. Iacovella , Sharon C. Glotzer

Phase separation of multicomponent liquid mixtures plays an integral part in many processes ranging from industry to cellular biology. In many cases the morphology of coexisting phases is crucially linked to the function of the separated…

Soft Condensed Matter · Physics 2020-11-25 Sheng Mao , Milena S. Chakraverti-Wuerthwein , Hunter Gaudio , Andrej Kosmrlj

Current graph clustering methods emphasize individual node and edge con nections, while ignoring higher-order organization at the level of motif. Re cently, higher-order graph clustering approaches have been designed by motif based…

Machine Learning · Computer Science 2024-05-21 Ye Liu , Xuelei Lin , Yejia Chen , Reynold Cheng

Complex crystal structures are composed of multiple local environments, and how this type of order emerges spontaneously during crystal growth has yet to be fully understood. We study crystal growth across various structures and along…

Soft Condensed Matter · Physics 2024-06-03 Maya M. Martirossyan , Matthew Spellings , Hillary Pan , Julia Dshemuchadse

The language and methods of algebraic topology, particularly homotopy theory, have been extensively used in the study of the identification, the classification and the evolution of defects. Topological methods provide the means for the…

High Energy Physics - Phenomenology · Physics 2007-05-23 E. D. M. Kavoussanaki

Most AI-for-Materials research to date has focused on ideal crystals, whereas real-world materials inevitably contain defects that play a critical role in modern functional technologies. The defects break geometric symmetry and increase…

Materials Science · Physics 2025-06-03 Ziduo Yang , Xiaoqing Liu , Xiuying Zhang , Pengru Huang , Kostya S. Novoselov , Lei Shen

Most existing popular methods for learning graph embedding only consider fixed-order global structural features and lack structures hierarchical representation. To address this weakness, we propose a novel graph embedding algorithm named…

Machine Learning · Computer Science 2021-02-03 Xue Liu , Wei Wei , Xiangnan Feng , Xiaobo Cao , Dan Sun

We use our theory of periodized discrete elasticity to characterize defects in graphene as the cores of dislocations or groups of dislocations. Earlier numerical implementations of the theory predicted some of the simpler defect groupings…

Mesoscale and Nanoscale Physics · Physics 2012-07-30 L. L. Bonilla , A. Carpio

This paper introduces and demonstrates a computational pipeline for the statistical analysis of shape graph datasets, namely geometric networks embedded in 2D or 3D spaces. Unlike traditional abstract graphs, our purpose is not only to…

Machine Learning · Computer Science 2026-02-19 Murad Hossen , Demetrio Labate , Nicolas Charon

Phase transformations and crystallographic defects are two essential tools to drive innovations in materials. Bulk materials design via tuning chemical compositions has been systematized using phase diagrams. We show here that the same…

Most existing graph clustering methods primarily focus on exploiting topological structure, often neglecting the ``missing-half" node feature information, especially how these features can enhance clustering performance. This issue is…

Machine Learning · Computer Science 2025-01-10 Xuanting Xie , Bingheng Li , Erlin Pan , Zhaochen Guo , Zhao Kang , Wenyu Chen

A general theory of topological classification of defects is introduced. We illustrate the application of tools from algebraic topology, including homotopy and cohomology groups, to classify defects including several explicit calculations…

Mathematical Physics · Physics 2021-06-15 Nivedita , Anurag Gupta

Designing model-independent anomaly detection algorithms for analyzing LHC data remains a central challenge in the search for new physics, due to the high dimensionality of collider events. In this work, we develop a graph autoencoder as an…

High Energy Physics - Phenomenology · Physics 2025-06-26 Jack Y. Araz , Dimitrios Athanasakos , Mateusz Ploskon , Felix Ringer

Introduced the quantitative measure of the structural complexity of the graph (complex network, etc.) based on a procedure similar to the renormalization process, considering the difference between actual and averaged graph structures on…

Physics and Society · Physics 2024-06-05 A. A. Snarskii
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