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We discuss the computational bottlenecks in molecular dynamics (MD) and describe the challenges in parallelizing the computation intensive tasks. We present a hybrid algorithm using MPI (Message Passing Interface) with OpenMP threads for…

Computational Physics · Physics 2015-07-28 Anirban Pal , Abhishek Agarwala , Soumyendu Raha , Baidurya Bhattacharya

In distributed learning, the goal is to perform a learning task over data distributed across multiple nodes with minimal (expensive) communication. Prior work (Daume III et al., 2012) proposes a general model that bounds the communication…

Machine Learning · Computer Science 2012-04-17 Hal Daume , Jeff M. Phillips , Avishek Saha , Suresh Venkatasubramanian

Communication compression is an essential strategy for alleviating communication overhead by reducing the volume of information exchanged between computing nodes in large-scale distributed stochastic optimization. Although numerous…

Machine Learning · Computer Science 2025-03-19 Yutong He , Xinmeng Huang , Yiming Chen , Wotao Yin , Kun Yuan

For parallel breadth first search (BFS) algorithm on large-scale distributed memory systems, communication often costs significantly more than arithmetic and limits the scalability of the algorithm. In this paper we sufficiently reduce the…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-29 Huiwei Lv , Guangming Tan , Mingyu Chen , Ninghui Sun

We present a novel, highly efficient algorithm to parallelize O(N^2) direct summation method for N-body problems with individual timesteps on distributed-memory parallel machines such as Beowulf clusters. Previously known algorithms, in…

Astrophysics · Physics 2009-11-07 Junichiro Makino

We study the scalability of consensus-based distributed optimization algorithms by considering two questions: How many processors should we use for a given problem, and how often should they communicate when communication is not free?…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-09-06 Konstantinos I. Tsianos , Sean Lawlor , Michael G. Rabbat

We prove $n^{1+\Omega(1/p)}/p^{O(1)}$ lower bounds for the space complexity of $p$-pass streaming algorithms solving the following problems on $n$-vertex graphs: * testing if an undirected graph has a perfect matching (this implies lower…

Computational Complexity · Computer Science 2016-02-10 Venkatesan Guruswami , Krzysztof Onak

Open Modification Search (OMS) is a promising algorithm for mass spectrometry analysis that enables the discovery of modified peptides. However, OMS encounters challenges as it exponentially extends the search scope. Existing OMS…

Hardware Architecture · Computer Science 2024-11-15 Keming Fan , Wei-Chen Chen , Sumukh Pinge , H. -S. Philip Wong , Tajana Rosing

A tight lower bound for required I/O when computing an ordinary matrix-matrix multiplication on a processor with two layers of memory is established. Prior work obtained weaker lower bounds by reasoning about the number of segments needed…

Computational Complexity · Computer Science 2019-02-07 Tyler Michael Smith , Bradley Lowery , Julien Langou , Robert A. van de Geijn

In current convolutional neural network (CNN) accelerators, communication (i.e., memory access) dominates the energy consumption. This work provides comprehensive analysis and methodologies to minimize the communication for CNN…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-20 Xiaoming Chen , Yinhe Han , Yu Wang

We consider distributed optimization over a $d$-dimensional space, where $K$ remote clients send coded gradient estimates over an {\em additive Gaussian Multiple Access Channel (MAC)} with noise variance $\sigma_z^2$. Furthermore, the…

Information Theory · Computer Science 2023-10-06 Shubham Jha

This thesis develops signal-processing algorithms and implementation schemes under constraints of minimal parallelism and memory space, with the goal of improving energy efficiency of low-power computing hardware. We propose (i) a…

Signal Processing · Electrical Eng. & Systems 2025-12-30 Sergey Salishev

For over a decade now we have been witnessing the success of {\em massive parallel computation} (MPC) frameworks, such as MapReduce, Hadoop, Dryad, or Spark. One of the reasons for their success is the fact that these frameworks are able to…

Data Structures and Algorithms · Computer Science 2018-02-02 Artur Czumaj , Jakub Łącki , Aleksander Mądry , Slobodan Mitrović , Krzysztof Onak , Piotr Sankowski

As massive graphs become more prevalent, there is a rapidly growing need for scalable algorithms that solve classical graph problems, such as maximum matching and minimum vertex cover, on large datasets. For massive inputs, several…

Data Structures and Algorithms · Computer Science 2018-12-31 Sepehr Assadi , MohammadHossein Bateni , Aaron Bernstein , Vahab Mirrokni , Cliff Stein

The Gap-Hamming-Distance problem arose in the context of proving space lower bounds for a number of key problems in the data stream model. In this problem, Alice and Bob have to decide whether the Hamming distance between their $n$-bit…

Computational Complexity · Computer Science 2009-02-17 Joshua Brody , Amit Chakrabarti

With ever growing data volume and model size, an error-tolerant, communication efficient, yet versatile distributed algorithm has become vital for the success of many large-scale machine learning applications. In this work we propose…

Optimization and Control · Mathematics 2017-04-13 Yi Zhou , Yaoliang Yu , Wei Dai , Yingbin Liang , Eric P. Xing

Synchronous mini-batch SGD is state-of-the-art for large-scale distributed machine learning. However, in practice, its convergence is bottlenecked by slow communication rounds between worker nodes. A natural solution to reduce communication…

Machine Learning · Computer Science 2019-04-26 Kumar Kshitij Patel , Aymeric Dieuleveut

Communication is a major factor determining the performance of algorithms on current computing systems; it is therefore valuable to provide tight lower bounds on the communication complexity of computations. This paper presents a lower…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-11-28 Gianfranco Bilardi , Michele Scquizzato , Francesco Silvestri

We consider parameter estimation in distributed networks, where each sensor in the network observes an independent sample from an underlying distribution and has $k$ bits to communicate its sample to a centralized processor which computes…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-23 Yanjun Han , Ayfer Özgür , Tsachy Weissman

Many modern parallel systems, such as MapReduce, Hadoop and Spark, can be modeled well by the MPC model. The MPC model captures well coarse-grained computation on large data --- data is distributed to processors, each of which has a…

Data Structures and Algorithms · Computer Science 2019-05-03 Alexandr Andoni , Clifford Stein , Peilin Zhong