English
Related papers

Related papers: Unsupervised Pre-training for Biomedical Question …

200 papers

As digital medical imaging becomes more prevalent and archives increase in size, representation learning exposes an interesting opportunity for enhanced medical decision support systems. On the other hand, medical imaging data is often…

Computer Vision and Pattern Recognition · Computer Science 2018-07-25 Eduardo Pinho , Carlos Costa

Recent breakthroughs of pretrained language models have shown the effectiveness of self-supervised learning for a wide range of natural language processing (NLP) tasks. In addition to standard syntactic and semantic NLP tasks, pretrained…

Computation and Language · Computer Science 2019-12-23 Wenhan Xiong , Jingfei Du , William Yang Wang , Veselin Stoyanov

Biomedical Question Answering aims to obtain an answer to the given question from the biomedical domain. Due to its high requirement of biomedical domain knowledge, it is difficult for the model to learn domain knowledge from limited…

Computation and Language · Computer Science 2022-06-29 Yuxuan Lu , Jingya Yan , Zhixuan Qi , Zhongzheng Ge , Yongping Du

Self-supervised Transformer based models, such as wav2vec 2.0 and HuBERT, have produced significant improvements over existing approaches to automatic speech recognition (ASR). This is evident in the performance of the wav2vec 2.0 based…

Computation and Language · Computer Science 2022-07-05 Mitchell DeHaven , Jayadev Billa

This paper presents a novel methodology for improving the performance of machine learning based space traffic management tasks through the use of a pre-trained orbit model. Taking inspiration from BERT-like self-supervised language models…

Using deep learning models on small scale datasets would result in overfitting. To overcome this problem, the process of pre-training a model and fine-tuning it to the small scale dataset has been used extensively in domains such as image…

Computation and Language · Computer Science 2019-11-05 Sanjay Kamath , Brigitte Grau , Yue Ma

Biomedical question-answering (QA) has gained increased attention for its capability to provide users with high-quality information from a vast scientific literature. Although an increasing number of biomedical QA datasets has been recently…

Computation and Language · Computer Science 2021-02-17 Gabriele Pergola , Elena Kochkina , Lin Gui , Maria Liakata , Yulan He

Recognition of biomedical entities from literature is a challenging research focus, which is the foundation for extracting a large amount of biomedical knowledge existing in unstructured texts into structured formats. Using the sequence…

Computation and Language · Computer Science 2021-05-18 Cong Sun , Zhihao Yang , Lei Wang , Yin Zhang , Hongfei Lin , Jian Wang

Recently, the self-supervised pre-training paradigm has shown great potential in leveraging large-scale unlabeled data to improve downstream task performance. However, increasing the scale of unlabeled pre-training data in real-world…

Computer Vision and Pattern Recognition · Computer Science 2022-12-13 Yiqi Lin , Huabin Zheng , Huaping Zhong , Jinjing Zhu , Weijia Li , Conghui He , Lin Wang

Images in the medical domain are fundamentally different from the general domain images. Consequently, it is infeasible to directly employ general domain Visual Question Answering (VQA) models for the medical domain. Additionally, medical…

Computer Vision and Pattern Recognition · Computer Science 2021-04-06 Yash Khare , Viraj Bagal , Minesh Mathew , Adithi Devi , U Deva Priyakumar , CV Jawahar

Finding an interpretable non-redundant representation of real-world data is one of the key problems in Machine Learning. Biological neural networks are known to solve this problem quite well in unsupervised manner, yet unsupervised…

Machine Learning · Computer Science 2020-10-13 Denis Kuzminykh , Laida Kushnareva , Timofey Grigoryev , Alexander Zatolokin

Vision-language models pre-trained on large scale of unlabeled biomedical images and associated reports learn generalizable semantic representations. These multi-modal representations can benefit various downstream tasks in the biomedical…

Computer Vision and Pattern Recognition · Computer Science 2025-06-03 Xinliu Zhong , Kayhan Batmanghelich , Li Sun

Small and imbalanced datasets commonly seen in healthcare represent a challenge when training classifiers based on deep learning models. So motivated, we propose a novel framework based on BioBERT (Bidirectional Encoder Representations from…

Computation and Language · Computer Science 2020-06-23 Shijing Si , Rui Wang , Jedrek Wosik , Hao Zhang , David Dov , Guoyin Wang , Ricardo Henao , Lawrence Carin

Unsupervised meta-learning aims to learn feature representations from unsupervised datasets that can transfer to downstream tasks with limited labeled data. In this paper, we propose a novel approach to unsupervised meta-learning that…

Machine Learning · Computer Science 2025-02-11 Anna Vettoruzzo , Lorenzo Braccaioli , Joaquin Vanschoren , Marlena Nowaczyk

Language model pre-training has proven to be useful in learning universal language representations. As a state-of-the-art language model pre-training model, BERT (Bidirectional Encoder Representations from Transformers) has achieved amazing…

Computation and Language · Computer Science 2020-02-06 Chi Sun , Xipeng Qiu , Yige Xu , Xuanjing Huang

User modeling is critical for personalized web applications. Existing user modeling methods usually train user models from user behaviors with task-specific labeled data. However, labeled data in a target task may be insufficient for…

Information Retrieval · Computer Science 2021-09-06 Chuhan Wu , Fangzhao Wu , Yang Yu , Tao Qi , Yongfeng Huang , Xing Xie

Transformers have gained increasing popularity in a wide range of applications, including Natural Language Processing (NLP), Computer Vision and Speech Recognition, because of their powerful representational capacity. However, harnessing…

Machine learning methods have recently achieved high-performance in biomedical text analysis. However, a major bottleneck in the widespread application of these methods is obtaining the required large amounts of annotated training data,…

Machine Learning · Computer Science 2019-12-06 Xing Meng , Craig H. Ganoe , Ryan T. Sieberg , Yvonne Y. Cheung , Saeed Hassanpour

Through solving pretext tasks, self-supervised learning leverages unlabeled data to extract useful latent representations replacing traditional input features in the downstream task. In audio/speech signal processing, a wide range of…

Audio and Speech Processing · Electrical Eng. & Systems 2022-11-23 Salah Zaiem , Titouan Parcollet , Slim Essid , Abdel Heba

Clinical data in hospitals are increasingly accessible for research through clinical data warehouses. However these documents are unstructured and it is therefore necessary to extract information from medical reports to conduct clinical…

Computation and Language · Computer Science 2024-04-04 Rian Touchent , Laurent Romary , Eric de la Clergerie