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In scientific simulations, observations, and experiments, the cost of transferring data to and from disk and across networks has become a significant bottleneck that particularly impacts subsequent data analysis and visualization. To…

Databases · Computer Science 2023-08-24 Victor A. P. Magri , Peter Lindstrom

Error-bounded lossy compression is a critical technique for significantly reducing scientific data volumes. With ever-emerging heterogeneous high-performance computing (HPC) architecture, GPU-accelerated error-bounded compressors (such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-09-07 Jiannan Tian , Sheng Di , Xiaodong Yu , Cody Rivera , Kai Zhao , Sian Jin , Yunhe Feng , Xin Liang , Dingwen Tao , Franck Cappello

Today's HPC applications are producing extremely large amounts of data, such that data storage and analysis are becoming more challenging for scientific research. In this work, we design a new error-controlled lossy compression algorithm…

Information Theory · Computer Science 2017-06-14 Dingwen Tao , Sheng Di , Zizhong Chen , Franck Cappello

We describe a novel framework for estimating subsurface properties, such as rock permeability and porosity, from time-lapse observed seismic data by coupling full-waveform inversion, subsurface flow processes, and rock physics models. For…

Geophysics · Physics 2020-05-06 Dongzhuo Li , Kailai Xu , Jerry M. Harris , Eric Darve

Phased array ultrasound is a widely used technique in non-destructive testing. Using piezoelectric elements as both sources and receivers provides a significant gain in information and enables more accurate defect detection. When all…

Computational Engineering, Finance, and Science · Computer Science 2026-01-13 Tim Bürchner , Simon Schmid , Lukas Bergbreiter , Ernst Rank , Stefan Kollmannsberger , Christian U. Grosse

A standard format used for storing the output of high-throughput sequencing experiments is the FASTQ format. It comprises three main components: (i) headers, (ii) bases (nucleotide sequences), and (iii) quality scores. FASTQ files are…

Data Structures and Algorithms · Computer Science 2023-04-19 Veronica Guerrini , Felipe A. Louza , Giovanna Rosone

Full waveform inversion (FWI) can be expressed in a Bayesian framework, where the associated uncertainties are captured by the posterior probability distribution (PPD). In practice, solving Bayesian FWI with sampling-based methods such as…

Geophysics · Physics 2025-11-05 Shuhua Hu , Mrinal K Sen , Zeyu Zhao , Abdelrahman Elmeliegy , Shuo Zhang

Full-waveform inversion (FWI) is an accurate imaging approach for modeling velocity structure by minimizing the misfit between recorded and predicted seismic waveforms. However, the strong non-linearity of FWI resulting from fitting…

Geophysics · Physics 2021-10-04 Weiqiang Zhu , Kailai Xu , Eric Darve , Biondo Biondi , Gregory C. Beroza

Elastic geophysical properties (such as P- and S-wave velocities) are of great importance to various subsurface applications like CO$_2$ sequestration and energy exploration (e.g., hydrogen and geothermal). Elastic full waveform inversion…

Full waveform inversion (FWI) is beginning to be used to characterize weak seismic events at different scales, an example of which is microseismic event (MSE) characterization. However, FWI with unknown sources is a severely underdetermined…

Optimization and Control · Mathematics 2021-08-17 Hossein S. Aghamiry , Ali Gholami , Stéphane Operto , Alison Malcolm

This paper presents error-bounded lossy compression tailored for particle datasets from diverse scientific applications in cosmology, fluid dynamics, and fusion energy sciences. As today's high-performance computing capabilities advance,…

Information Theory · Computer Science 2024-04-05 Congrong Ren , Sheng Di , Longtao Zhang , Kai Zhao , Hanqi Guo

Ultrasound computed tomography is emerging as a promising safe and accessible modality for soft-tissue medical imaging, with full waveform inversion playing a key role in unlocking its full potential for high-resolution, quantitative…

Medical Physics · Physics 2026-05-26 Yifei Sun , Yubing Li , Chang Su , Lekang Jiang , Xiangwei Lu , Ligang Cui , He Sun , Weijun Lin

With ever-increasing volumes of scientific floating-point data being produced by high-performance computing applications, significantly reducing scientific floating-point data size is critical, and error-controlled lossy compressors have…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-01-20 Robert Underwood , Sheng Di , Jon C. Calhoun , Franck Cappello

As deep learning models grow and deployment becomes more widespread, reducing the storage and transmission costs of neural network weights has become increasingly important. While prior work such as ZipNN has shown that lossless compression…

Machine Learning · Computer Science 2025-08-28 Anat Heilper , Doron Singer

Full waveform inversion (FWI) is a high-resolution seismic inversion technique popularly used in oil and gas exploration. Traditional FWI employs the $l_2$ norm measurement to minimize the misfit between observed and predicted seismic data.…

Geophysics · Physics 2025-04-03 Liangsheng He , Chao Song , Cai Liu

Error-bounded lossy compression is a critical technique for significantly reducing scientific data volumes. Compared to CPU-based compressors, GPU-based compressors exhibit substantially higher throughputs, fitting better for today's HPC…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-10-02 Jinyang Liu , Jiannan Tian , Shixun Wu , Sheng Di , Boyuan Zhang , Robert Underwood , Yafan Huang , Jiajun Huang , Kai Zhao , Guanpeng Li , Dingwen Tao , Zizhong Chen , Franck Cappello

Seismic full-waveform inversion (FWI) provides high resolution images of the subsurface by exploiting information in the recorded seismic waveforms. This is achieved by solving a highly nonnlinear and nonunique inverse problem. Bayesian…

Geophysics · Physics 2023-02-22 Xin Zhang , Angus Lomas , Muhong Zhou , York Zheng , Andrew Curtis

Context. Processing radio interferometric data often requires storing forward-predicted model data. In direction-dependent calibration, these data may have a volume an order of magnitude larger than the original data. Existing lossy…

Instrumentation and Methods for Astrophysics · Physics 2026-02-04 A. R. Offringa , R. J. van Weeren

Floating-point data is widely used across various domains. Depending on the required precision, each floating-point value can occupy several bytes. Lossless storage of this information is crucial due to its critical accuracy, as seen in…

Databases · Computer Science 2025-08-11 Samirasadat Jamalidinan , Kazem Cheshmi

Spatially 3-dimensional seismic full waveform inversion (3D FWI) is a highly nonlinear and computationally demanding inverse problem that constructs 3D subsurface seismic velocity structures using seismic waveform data. To characterise…

Geophysics · Physics 2025-04-21 Xuebin Zhao , Andrew Curtis
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