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We propose a novel architecture for Graph Neural Networks that is inspired by the idea behind Tree Kernels of measuring similarity between trees by taking into account their common substructures, named fragments. By imposing a series of…

Computation and Language · Computer Science 2021-10-04 Federico Ruggeri , Marco Lippi , Paolo Torroni

We investigate two types of graph layouts, track layouts and layered path decompositions, and the relations between their associated parameters track-number and layered pathwidth. We use these two types of layouts to characterize leveled…

Combinatorics · Mathematics 2019-04-10 Michael J. Bannister , William E. Devanny , Vida Dujmović , David Eppstein , David R. Wood

In this paper, we introduce two families of planar and self-similar graphs which have small-world properties. The constructed models are based on an iterative process where each step of a certain formulation of modules results in a final…

Combinatorics · Mathematics 2024-04-19 Muhammed Alaa Morsy , Mohamed Anwar , Abdallah Aboutahoun

A rectangle visibility representation (RVR) of a graph consists of an assignment of axis-aligned rectangles to vertices such that for every edge there exists a horizontal or vertical line of sight between the rectangles assigned to its…

Computational Geometry · Computer Science 2019-09-04 Therese Biedl , Giuseppe Liotta , Fabrizio Montecchiani

We obtain new parameterized algorithms for the classical problem of determining whether a directed acyclic graph admits an upward planar drawing. Our results include a new fixed-parameter algorithm parameterized by the number of sources, an…

Computational Geometry · Computer Science 2022-03-11 Steven Chaplick , Emilio Di Giacomo , Fabrizio Frati , Robert Ganian , Chrysanthi N. Raftopoulou , Kirill Simonov

We consider the Steiner tree problem on graphs where we are given a set of nodes and the goal is to find a tree sub-graph of minimum weight that contains all nodes in the given set, potentially including additional nodes. This is a…

Data Structures and Algorithms · Computer Science 2025-04-24 Jiwei Zhang , Deepak Ajwani

We propose a flexible and multi-scale method for organizing, visualizing, and understanding datasets sampled from or near stratified spaces. The first part of the algorithm produces a cover tree using adaptive thresholds based on a…

Computational Geometry · Computer Science 2016-03-01 Paul Bendich , Ellen Gasparovic , Christopher J. Tralie , John Harer

In recent years, kernel methods are widespread in tasks of similarity measuring. Specifically, graph kernels are widely used in fields of bioinformatics, chemistry and financial data analysis. However, existing methods, especially entropy…

Machine Learning · Computer Science 2023-03-27 Chengyu Sun , Xing Ai , Zhihong Zhang , Edwin R Hancock

Cohen-Addad, Le, Pilipczuk, and Pilipczuk [CLPP23] recently constructed a stochastic embedding with expected $1+\varepsilon$ distortion of $n$-vertex planar graphs (with polynomial aspect ratio) into graphs of treewidth…

Data Structures and Algorithms · Computer Science 2024-11-04 Hsien-Chih Chang , Vincent Cohen-Addad , Jonathan Conroy , Hung Le , Marcin Pilipczuk , Michał Pilipczuk

Steiner Tree Packing (STP) is a notoriously hard problem in classical complexity theory, which is of practical relevance to VLSI circuit design. Previous research has approached this problem by providing heuristic or approximate algorithms.…

Data Structures and Algorithms · Computer Science 2025-05-15 Niko Hastrich , Kirill Simonov

Graph embedding aims at learning a vector-based representation of vertices that incorporates the structure of the graph. This representation then enables inference of graph properties. Existing graph embedding techniques, however, do not…

Despite the recent success of reconciling spike-based coding with the error backpropagation algorithm, spiking neural networks are still mostly applied to tasks stemming from sensory processing, operating on traditional data structures like…

Neural and Evolutionary Computing · Computer Science 2023-08-25 Dominik Dold , Josep Soler Garrido

With the popularity of mobile devices and the development of geo-positioning technology, location-based services (LBS) attract much attention and top-k spatial keyword queries become increasingly complex. It is common to see that clients…

Data Structures and Algorithms · Computer Science 2022-07-26 Xinshi Zang , Peiwen Hao , Xiaofeng Gao , Bin Yao , Guihai Chen

Let $G$ be a 3-connected planar graph. Define the co-tree of a spanning tree $T$ of $G$ as the graph induced by the dual edges of $E(G)-E(T)$. The well-known cut-cycle duality implies that the co-tree is itself a tree. Let a $k$-tree be a…

Discrete Mathematics · Computer Science 2024-06-05 Christian Ortlieb , Jens M. Schmidt

We prove that there is a randomized polynomial-time algorithm that given an edge-weighted graph $G$ excluding a fixed-minor $Q$ on $n$ vertices and an accuracy parameter $\varepsilon>0$, constructs an edge-weighted graph~$H$ and an…

Data Structures and Algorithms · Computer Science 2023-04-17 Vincent Cohen-Addad , Hung Le , Marcin Pilipczuk , Michał Pilipczuk

In deep neural networks, better results can often be obtained by increasing the complexity of previously developed basic models. However, it is unclear whether there is a way to boost performance by decreasing the complexity of such models.…

Machine Learning · Computer Science 2022-06-07 Junran Wu , Shangzhe Li , Jianhao Li , Yicheng Pan , Ke Xu

This article firstly attempts to explore parallel algorithms of learning distributed representations for both entities and relations in large-scale knowledge repositories with {\it MapReduce} programming model on a multi-core processor. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-09-04 Miao Fan , Qiang Zhou , Thomas Fang Zheng , Ralph Grishman

Embedding learning transforms discrete data entities into continuous numerical representations, encoding features/properties of the entities. Despite the outstanding performance reported from different embedding learning algorithms, few…

Machine Learning · Computer Science 2023-08-04 Yan Zheng , Junpeng Wang , Chin-Chia Michael Yeh , Yujie Fan , Huiyuan Chen , Liang Wang , Wei Zhang

Consider the following problem: given a graph with edge costs and a subset Q of vertices, find a minimum-cost subgraph in which there are two edge-disjoint paths connecting every pair of vertices in Q. The problem is a failure-resilient…

Data Structures and Algorithms · Computer Science 2015-10-01 Glencora Borradaile , Philip Klein

We study compact straight-line embeddings of trees. We show that perfect binary trees can be embedded optimally: a tree with $n$ nodes can be drawn on a $\sqrt n$ by $\sqrt n$ grid. We also show that testing whether a given binary tree has…

Computational Geometry · Computer Science 2018-09-03 Hugo A. Akitaya , Maarten Löffler , Irene Parada
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