Related papers: An SPQR-Tree-Like Embedding Representation for Lev…
Spectral Embedding (SE) has often been used to map data points from non-linear manifolds to linear subspaces for the purpose of classification and clustering. Despite significant advantages, the subspace structure of data in the original…
The Subtree Isomorphism problem asks whether a given tree is contained in another given tree. The problem is of fundamental importance and has been studied since the 1960s. For some variants, e.g., ordered trees, near-linear time algorithms…
Semidefinite programming (SDP) problems are challenging to solve because of their high dimensionality. However, solving sparse SDP problems with small tree-width are known to be relatively easier because: (1) they can be decomposed into…
In this paper we propose and study a new complexity model for approximation algorithms. The main motivation are practical problems over large data sets that need to be solved many times for different scenarios, e.g., many multicast trees…
Planar partial $3$-trees are subgraphs of those planar graphs obtained by repeatedly inserting a vertex of degree $3$ into a face. In this paper, we show that planar partial $3$-trees have $1$-string $B_1$-VPG representations, i.e.,…
We study the interplay between embedding constrained planarity and hybrid planarity testing. We consider a constrained planarity testing problem, called 1-Fixed Constrained Planarity, and prove that this problem can be solved in quadratic…
Given a $\{0,1\}$-matrix $M$, the graph realization problem for $M$ asks if there exists a spanning forest such that the columns of $M$ are incidence vectors of paths in the forest. The problem is closely related to the recognition of…
We present the first parallel fixed-parameter algorithm for subgraph isomorphism in planar graphs, bounded-genus graphs, and, more generally, all minor-closed graphs of locally bounded treewidth. Our randomized low depth algorithm has a…
A square-contact representation of a planar graph $G=(V,E)$ maps vertices in $V$ to interior-disjoint axis-aligned squares in the plane and edges in $E$ to adjacencies between the sides of the corresponding squares. In this paper, we study…
Tree projections provide a unifying framework to deal with most structural decomposition methods of constraint satisfaction problems (CSPs). Within this framework, a CSP instance is decomposed into a number of sub-problems, called views,…
In the Partially Embedded Planarity problem, we are given a graph $G$ together with a topological drawing of a subgraph $H$ of $G$. The task is to decide whether the drawing can be extended to a drawing of the whole graph such that no two…
In this paper, we address the problem of enumerating all induced subtrees in an input k-degenerate graph, where an induced subtree is an acyclic and connected induced subgraph. A graph G = (V, E) is a k-degenerate graph if for any its…
Simultaneous Embedding with Fixed Edges (SEFE) is a problem where given $k$ planar graphs we ask whether they can be simultaneously embedded so that the embedding of each graph is planar and common edges are drawn the same. Problems of SEFE…
Contemporary accelerator designs exhibit a high degree of spatial localization, wherein two-dimensional physical distance determines communication costs between processing elements. This situation presents considerable algorithmic…
The growing complexity of spatial and structural information in 3D data makes data inspection and visualization a challenging task. We describe a method to create a planar embedding of 3D treelike structures using their skeleton…
SpectralNet is a graph clustering method that uses neural network to find an embedding that separates the data. So far it was only used with $k$-nn graphs, which are usually constructed using a distance metric (e.g., Euclidean distance).…
Straight-line (linear) context-free tree (SLT) grammars have been used to compactly represent ordered trees. It is well known that equivalence of SLT grammars is decidable in polynomial time. Here we extend this result and show that…
Optimal linear-time algorithms for testing the planarity of a graph are well-known for over 35 years. However, these algorithms are quite involved and recent publications still try to give simpler linear-time tests. We give a simple…
Snarls and superbubbles are fundamental pangenome decompositions capturing variant sites. These bubble-like structures underpin key tasks in computational pangenomics, including structural-variant genotyping, distance indexing, haplotype…
Many algorithms have been developed for NP-hard problems on graphs with small treewidth $k$. For example, all problems that are expressable in linear extended monadic second order can be solved in linear time on graphs of bounded treewidth.…