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Generative retrieval shed light on a new paradigm of document retrieval, aiming to directly generate the identifier of a relevant document for a query. While it takes advantage of bypassing the construction of auxiliary index structures,…

Information Retrieval · Computer Science 2025-06-03 Sunkyung Lee , Minjin Choi , Jongwuk Lee

Indexes are models: a B-Tree-Index can be seen as a model to map a key to the position of a record within a sorted array, a Hash-Index as a model to map a key to a position of a record within an unsorted array, and a BitMap-Index as a model…

Databases · Computer Science 2018-05-01 Tim Kraska , Alex Beutel , Ed H. Chi , Jeffrey Dean , Neoklis Polyzotis

The ongoing explosion of genome sequence data is transforming how we reconstruct and understand the histories of biological systems. Across biological scales, from individual cells to populations and species, trees-based models provide a…

Populations and Evolution · Quantitative Biology 2025-12-08 Yun Deng , Shing H. Zhan , Yulin Zhang , Chao Zhang , Bingjie Chen

As a key ingredient of the DBMS, index plays an important role in the query optimization and processing. However, it is a non-trivial task to apply existing indexes or design new indexes for new applications, where both data distribution…

Databases · Computer Science 2020-03-05 Sai Wu , Xinyi Yu , Xiaojie Feng , Feifei Li , Wei Cao , Gang Chen

We introduce a cluster evaluation technique called Tree Index. Our Tree Index algorithm aims at describing the structural information of the clustering rather than the quantitative format of cluster-quality indexes (where the representation…

Machine Learning · Computer Science 2020-03-25 A. H. Beg , Md Zahidul Islam , Vladimir Estivill-Castro

Index structures are one of the most important tools that DBAs leverage to improve the performance of analytics and transactional workloads. However, building several indexes over large datasets can often become prohibitive and consume…

Databases · Computer Science 2020-03-26 Alex Galakatos , Michael Markovitch , Carsten Binnig , Rodrigo Fonseca , Tim Kraska

Recent advancements in learned index structures propose replacing existing index structures, like B-Trees, with approximate learned models. In this work, we present a unified benchmark that compares well-tuned implementations of three…

Although the analysis of rooted tree shape has wide-ranging applications, notions of tree balance have developed independently in different domains. In computer science, a balanced tree is one that enables efficient updating and retrieval…

Quantitative Methods · Quantitative Biology 2025-07-14 Veselin Manojlović , Armaan Ahmed , Yannick Viossat , Robert Noble

This paper proposed a new method to build the large scale DNA sequences search system based on web search engine technology. We give a very brief introduction for the methods used in search engine first. Then how to build a DNA search…

Genomics · Quantitative Biology 2011-10-11 Wang Liang , Fang Bo

Motivated by a desire to improve on the current state of the art in genetic programming, and aided by recent progress in understanding the computational aspects of evolutionary systems, we describe a process that creates a set of generic…

Neural and Evolutionary Computing · Computer Science 2019-02-19 David Landaeta

The recent introduction of learned indexes has shaken the foundations of the decades-old field of indexing data structures. Combining, or even replacing, classic design elements such as B-tree nodes with machine learning models has proven…

Data Structures and Algorithms · Computer Science 2020-05-08 Paolo Ferragina , Giorgio Vinciguerra

Industrial robots can solve very complex tasks in controlled environments, but modern applications require robots able to operate in unpredictable surroundings as well. An increasingly popular reactive policy architecture in robotics is…

Robotics · Computer Science 2021-03-17 Jonathan Styrud , Matteo Iovino , Mikael Norrlöf , Mårten Björkman , Christian Smith

Generative models reliant on sequential autoregression have been at the forefront of language generation for an extensive period, particularly following the introduction of widely acclaimed transformers. Despite its excellent performance,…

Computation and Language · Computer Science 2024-06-21 Yaguang Li , Xin Chen

In this paper, we introduce an alternative approach, namely GEN (Genetic Evolution Network) Model, to the deep learning models. Instead of building one single deep model, GEN adopts a genetic-evolutionary learning strategy to build a group…

Machine Learning · Computer Science 2018-06-06 Jiawei Zhang , Limeng Cui , Fisher B. Gouza

We design the first learned index that solves the dictionary problem with time and space complexity provably better than classic data structures for hierarchical memories, such as B-trees, and modern learned indexes. We call our solution…

Data Structures and Algorithms · Computer Science 2019-03-12 Giorgio Vinciguerra , Paolo Ferragina , Michele Miccinesi

Genomic and metagenomic fields, generating huge sets of short genomic sequences, brought their own share of high performance problems. To extract relevant pieces of information from the huge data sets generated by current sequencing…

Data Structures and Algorithms · Computer Science 2016-05-27 Camille Marchet , Antoine Limasset , Lucie Bittner , Pierre Peterlongo

Generative retrieval generates identifiers of relevant documents in an end-to-end manner using a sequence-to-sequence architecture for a given query. The relation between generative retrieval and other retrieval methods, especially those…

Information Retrieval · Computer Science 2024-04-02 Shiguang Wu , Wenda Wei , Mengqi Zhang , Zhumin Chen , Jun Ma , Zhaochun Ren , Maarten de Rijke , Pengjie Ren

With current hardware and software, a standard computer can now hold in RAM an index for approximate pattern matching on about half a dozen human genomes. Sequencing technologies have improved so quickly, however, that scientists will soon…

Data Structures and Algorithms · Computer Science 2013-07-25 Hector Ferrada , Travis Gagie , Tommi Hirvola , Simon J. Puglisi

Natural language text corpora are often available as sets of syntactically parsed trees. A wide range of expressive tree queries are possible over such parsed trees that open a new avenue in searching over natural language text. They not…

Databases · Computer Science 2012-08-02 Pirooz Chubak , Davood Rafiei

The use of machine learning algorithms in finance, medicine, and criminal justice can deeply impact human lives. As a consequence, research into interpretable machine learning has rapidly grown in an attempt to better control and fix…

Machine Learning · Computer Science 2021-02-02 Thibaut Vidal , Toni Pacheco , Maximilian Schiffer
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