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The large-scale shape and function of metabolic networks are intriguing topics of systems biology. Such networks are on one hand commonly regarded as modular (i.e. built by a number of relatively independent subsystems), but on the other…

Molecular Networks · Quantitative Biology 2011-11-10 Mikael Huss , Petter Holme

If brain anatomy and dynamics have a genuine complex network structure as it has become standard to posit, it is also reasonable to assume that such a structure should play a key role not only in brain function but also in brain…

Neurons and Cognition · Quantitative Biology 2025-08-01 David Papo , Javier M. Buldú

Spontaneous brain activity, as observed in functional neuroimaging, has been shown to display reproducible structure that expresses brain architecture and carries markers of brain pathologies. An important view of modern neuroscience is…

Machine Learning · Statistics 2010-11-15 Gaël Varoquaux , Alexandre Gramfort , Jean Baptiste Poline , Bertrand Thirion

Randomly connected neural networks have long served as a theoretical tool for studying collective dynamics in neural populations, yet quantitative comparisons to experiments remain limited. Recent technological advances have made it…

Neurons and Cognition · Quantitative Biology 2026-05-27 Zehui Zhao , Michael J Pasek , Ilya M Nemenman

Background music is known to affect performance on cognitive tasks, possibly due to temporal modulations in the acoustic signal, but little is known about how music should be designed to aid performance. Since acoustic modulation has been…

Neurons and Cognition · Quantitative Biology 2019-07-17 Kevin J P Woods , Adam Hewett , Andrea Spencer , Benjamin Morillon , Psyche Loui

Recent studies in neuroscience highlight the significant potential of brain connectivity networks, which are commonly constructed from functional magnetic resonance imaging (fMRI) data for brain disorder diagnosis. Traditional brain…

This paper represents a contribution to the study of the brain functional connectivity from the perspective of complex networks theory. More specifically, we apply graph theoretical analyses to provide evidence of the modular structure of…

Neurons and Cognition · Quantitative Biology 2016-09-06 Giampiero Bardella , Angelo Bifone , Andrea Gabrielli , Alessandro Gozzi , Tiziano Squartini

The ubiquity of modules in biological networks may result from an evolutionary benefit of a modular organization. For instance, modularity may increase the rate of adaptive evolution, because modules can be easily combined into new…

Molecular Networks · Quantitative Biology 2011-08-26 Areejit Samal , Andreas Wagner , Olivier C. Martin

We analyze the existence of community structures in two different social networks obtained from similarity and collaborative features between musical artists. Our analysis reveals some characteristic organizational patterns and provides…

Physics and Society · Physics 2009-11-13 T. Teitelbaum , P. Balenzuela , P. Cano , J. M. Buldu

The process of reconstructing experiences from human brain activity offers a unique lens into how the brain interprets and represents the world. In this paper, we introduce a method for reconstructing music from brain activity, captured…

Neurons and Cognition · Quantitative Biology 2026-02-12 Timo I. Denk , Yu Takagi , Takuya Matsuyama , Andrea Agostinelli , Tomoya Nakai , Christian Frank , Shinji Nishimoto

Many real-world complex networks exhibit a community structure, in which the modules correspond to actual functional units. Identifying these communities is a key challenge for scientists. A common approach is to search for the network…

Physics and Society · Physics 2016-12-22 Federico Botta , Charo I. del Genio

We investigate the connection between the dynamics of synchronization and the modularity on complex networks. Simulating the Kuramoto's model in complex networks we determine patterns of meta-stability and calculate the modularity of the…

Disordered Systems and Neural Networks · Physics 2009-11-11 Alex Arenas , Albert Diaz-Guilera

Recent advances in experimental neuroscience allow, for the first time, non-invasive studies of the white matter tracts in the human central nervous system, thus making available cutting-edge brain anatomical data describing these global…

Quantitative Methods · Quantitative Biology 2008-11-06 Jonathan J. Crofts , Desmond J. Higham

Brain networks, graphical models such as those constructed from MRI, have been widely used in pathological prediction and analysis of brain functions. Within the complex brain system, differences in neuronal connection strengths parcellate…

Machine Learning · Computer Science 2023-05-09 Wei Dai , Hejie Cui , Xuan Kan , Ying Guo , Sanne van Rooij , Carl Yang

Auditory perception involves cues in the monaural auditory pathways as well as binaural cues based on differences between the ears. So far auditory models have often focused on either monaural or binaural experiments in isolation. Although…

Audio and Speech Processing · Electrical Eng. & Systems 2026-04-24 Thomas Biberger , Stephan D. Ewert

Universality is a key hypothesis in mechanistic interpretability -- that different models learn similar features and circuits when trained on similar tasks. In this work, we study the universality hypothesis by examining how small neural…

Machine Learning · Computer Science 2023-05-26 Bilal Chughtai , Lawrence Chan , Neel Nanda

Despite a multitude of empirical studies, little consensus exists on whether neural networks are able to generalise compositionally, a controversy that, in part, stems from a lack of agreement about what it means for a neural model to be…

Computation and Language · Computer Science 2020-02-25 Dieuwke Hupkes , Verna Dankers , Mathijs Mul , Elia Bruni

Modular structure is ubiquitous among complex networks. We note that most such systems are subject to multiple structural and functional constraints, e.g., minimizing the average path length and the total number of links, while maximizing…

Physics and Society · Physics 2007-11-05 Raj Kumar Pan , Sitabhra Sinha

Modularity is a very widely used measure of the level of clustering or community structure in networks. Here we consider a recent generalisation of the definition of modularity to temporal graphs, whose edge-sets change over discrete…

Combinatorics · Mathematics 2025-07-24 Vilhelm Agdur , Jessica Enright , Laura Larios-Jones , Kitty Meeks , Fiona Skerman , Ella Yates

This paper presents the foundation for a decomposition theory for Boolean networks, a type of discrete dynamical system that has found a wide range of applications in the life sciences, engineering, and physics. Given a Boolean network…

Dynamical Systems · Mathematics 2022-06-10 Claus Kadelka , Reinhard Laubenbacher , David Murrugarra , Alan Veliz-Cuba , Matthew Wheeler