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Due to the spontaneous nature of resting-state fMRI (rs-fMRI) signals, cross-subject comparison and therefore, group studies of rs-fMRI are challenging. Most existing group comparison methods use features extracted from the fMRI time…

Signal Processing · Electrical Eng. & Systems 2020-12-15 Anand A. Joshi , Soyoung Choi , Haleh Akrami , Richard M. Leahy

The entrainment between weakly-coupled nonlinear oscillators, as well as between complex signals such as those representing physiological activity, is frequently assessed in terms of whether a stable relationship is detectable between the…

Neurons and Cognition · Quantitative Biology 2019-02-27 Ludovico Minati , Natsue Yoshimura , Mattia Frasca , Stanislaw Drozdz , Yasuharu Koike

For neurological disorders and diseases, functional and anatomical connectomes of the human brain can be used to better inform targeted interventions and treatment strategies. Functional magnetic resonance imaging (fMRI) is a non-invasive…

Methodology · Statistics 2023-07-03 Matt Ryan , Gary Glonek , Jono Tuke , Melissa Humphries

Understanding interactions in complex systems requires capturing the relative timing of coupling, not only its strength. Phase synchronization captures this timing, yet most methods either reduce the phase to its cosine or collapse it into…

Neurons and Cognition · Quantitative Biology 2026-01-27 Sir-Lord Wiafe , Najme Soleimani , Masoud Seraji , Bradley Baker , Robyn Miller , Ashkan Faghiri , Vince D. Calhoun

A statistical approach for combination of channel phases is developed for optimizing the Contrast-to-Noise Ratio (CNR) in Susceptibility Weighted Images (SWI) acquired using autocalibrating partially parallel techniques. The unwrapped phase…

Computer Vision and Pattern Recognition · Computer Science 2016-11-01 Sreekanth Madhusoodhanan , Joseph Suresh Paul

Coherence and phase synchronization between time series corresponding to different spatial locations are usually interpreted as indicators of the connectivity between locations. In neurophysiology, time series of electric neuronal activity…

Methodology · Statistics 2007-07-12 Roberto D. Pascual-Marqui

Different brain imaging modalities offer unique insights into brain function and structure. Combining them enhances our understanding of neural mechanisms. Prior multimodal studies fusing functional MRI (fMRI) and structural MRI (sMRI) have…

Computer Vision and Pattern Recognition · Computer Science 2024-11-21 Oktay Agcaoglu , Rogers F. Silva , Deniz Alacam , Sergey Plis , Tulay Adali , Vince Calhoun

A new type of nonlinear time series analysis is introduced, based on phases, which are defined as polar angles in spaces spanned by a finite number of delayed coordinates. A canonical choice of the polar axis and a related implicit…

Chaotic Dynamics · Physics 2009-10-31 F. R. Drepper

Synchronization is a widespread phenomenon in the brain. Despite numerous studies, the specific parameter configurations of the synaptic network structure and learning rules needed to achieve robust and enduring synchronization in neurons…

Neurons and Cognition · Quantitative Biology 2023-08-15 Marius E. Yamakou , Mathieu Desroches , Serafim Rodrigues

Brain regions are often topographically connected: nearby locations within one brain area connect with nearby locations in another area. Mapping these connection topographies, or 'connectopies' in short, is crucial for understanding how…

Quantitative Methods · Quantitative Biology 2017-07-18 Koen V. Haak , Andre F. Marquand , Christian F. Beckmann

Objective. Imaging dynamic object with high temporal resolution is challenging in magnetic resonance imaging (MRI). Partial separable (PS) model was proposed to improve the imaging quality by reducing the degrees of freedom of the inverse…

Image and Video Processing · Electrical Eng. & Systems 2023-05-24 Zhongsen Li , Aiqi Sun , Chuyu Liu , Haining Wei , Shuai Wang , Mingzhu Fu , Rui Li

Functional Magnetic Resonance Images acquired during resting-state provide information about the functional organization of the brain through measuring correlations between brain areas. Independent components analysis is the reference…

Neurons and Cognition · Quantitative Biology 2014-12-15 Alexandre Abraham , Elvis Dohmatob , Bertrand Thirion , Dimitris Samaras , Gael Varoquaux

Studying the flow of information between different areas of the brain can be performed by using the so-called Partial Directed Coherence. This measure is usually evaluated by first identifying a multivariate autoregressive model, and then…

Neurons and Cognition · Quantitative Biology 2013-11-26 Pierre-Olivier Amblard

Background: Recent studies have indicated that functional connectivity is dynamic even during rest. A common approach to modeling the dynamic functional connectivity in whole-brain resting-state fMRI is to compute the correlation between…

Neurons and Cognition · Quantitative Biology 2019-11-05 Shih-Gu Huang , S. Balqis Samdin , Chee-Ming Ting , Hernando Ombao , Moo K. Chung

In this paper, we present a novel and versatile method to study the dynamics of resting-state fMRI brain connectivity with a high temporal sensitivity. Whereas most existing methods often rely on dividing the time-series into larger…

Neurons and Cognition · Quantitative Biology 2016-01-14 William Hedley Thompson , Peter Fransson

Signal analysis is one of the finest scientific techniques in communication theory. Some quantitative and qualitative measures describe the pattern of a music signal, vary from one to another. Same musical recital, when played by different…

Chaotic Dynamics · Physics 2015-06-22 Sayan Mukherjee , Sanjay Kumar Palit , Santo Banerjee , MRK Ariffin , D. K. Bhattacharya

Functional brain connectivity, as revealed through distant correlations in the signals measured by functional Magnetic Resonance Imaging (fMRI), is a promising source of biomarkers of brain pathologies. However, establishing and using…

Inferring a binary connectivity graph from resting-state fMRI data for a single subject requires making several methodological choices and assumptions that can significantly affect the results. In this study, we investigate the robustness…

Methodology · Statistics 2025-03-20 Alice Chevaux , Ali Fahkar , Kévin Polisano , Irène Gannaz , Sophie Achard

Resting-state fMRI (rs-fMRI) functional connectivity (FC) analysis provides valuable insights into the relationships between different brain regions and their potential implications for neurological or psychiatric disorders. However,…

Image and Video Processing · Electrical Eng. & Systems 2023-11-20 Xiatian Zhang , Sisi Zheng , Hubert P. H. Shum , Haozheng Zhang , Nan Song , Mingkang Song , Hongxiao Jia

Big data initiatives such as the Enhancing NeuroImaging Genetics through Meta-Analysis consortium (ENIGMA), combine data collected by independent studies worldwide to achieve more accurate estimates of effect sizes and more reliable and…

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