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In this paper we present a systematic, data-driven approach to discovering "bespoke" coarse variables based on manifold learning algorithms. We illustrate this methodology with the classic Kuramoto phase oscillator model, and demonstrate…

Adaptation and Self-Organizing Systems · Physics 2020-04-14 Thomas N. Thiem , Mahdi Kooshkbaghi , Tom Bertalan , Carlo R. Laing , Ioannis G. Kevrekidis

We present an equation-free multi-scale approach to the computational study of the collective dynamics of the Kuramoto model [{\it Chemical Oscillations, Waves, and Turbulence}, Springer-Verlag (1984)], a prototype model for coupled…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Sung Joon Moon , Ioannis G. Kevrekidis

The combination of high-dimensionality and disparity of time scales encountered in many problems in computational physics has motivated the development of coarse-grained (CG) models. In this paper, we advocate the paradigm of data-driven…

Computational Physics · Physics 2018-03-05 L. Felsberger , P. S. Koutsourelakis

Simulations of condensed matter systems often focus on the dynamics of a few distinguished components but require integrating the dynamics of the full system. A prime example is a molecular dynamics simulation of a (macro)molecule in…

Computational Physics · Physics 2024-03-12 Mauricio J. del Razo , Daan Crommelin , Peter G. Bolhuis

We propose a Kuramoto model of coupled oscillators on a time-varying graph, whose dynamics is dictated by a Markov process in the space of graphs. The simplest representative is considering a base graph and then the subgraph determined by…

Probability · Mathematics 2023-07-10 Pablo Groisman , Ruojun Huang , Hernan Vivas

We present a data-driven machine-learning approach for modeling space-time socioeconomic dynamics. Through coarse-graining fine-scale observations, our modeling framework simplifies these complex systems to a set of tractable mechanistic…

Machine Learning · Computer Science 2024-07-26 James Koch , Pranab Roy Chowdhury , Heng Wan , Parin Bhaduri , Jim Yoon , Vivek Srikrishnan , W. Brent Daniel

We present an equation-free computational approach to the study of the coarse-grained dynamics of {\it finite} assemblies of {\it non-identical} coupled oscillators at and near full synchronization. We use coarse-grained observables which…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Sung Joon Moon , R. Ghanem , I. G. Kevrekidis

We propose a novel and systematic method for coarse-graining oscillator networks described by phase equations. Our coarse-graining method enables us to obtain the closed coarse-grained equations for a few effective eigenmodes, which is…

Adaptation and Self-Organizing Systems · Physics 2013-11-06 Yuki Izumida , Hiroshi Kori

While existing mathematical descriptions can accurately account for phenomena at microscopic scales (e.g. molecular dynamics), these are often high-dimensional, stochastic and their applicability over macroscopic time scales of physical…

Machine Learning · Statistics 2016-09-08 P. S. Koutsourelakis , Elias Bilionis

Data-based discovery of effective, coarse-grained (CG) models of high-dimensional dynamical systems presents a unique challenge in computational physics and particularly in the context of multiscale problems. The present paper offers a…

Computational Physics · Physics 2020-08-26 Sebastian Kaltenbach , Phaedon-Stelios Koutsourelakis

The dynamics of large systems of coupled oscillators is a subject of increasing importance with prominent applications in several areas such as physics and biology. The Kuramoto model, where a set of oscillators move around a circle…

Adaptation and Self-Organizing Systems · Physics 2021-11-24 Ana Elisa D. Barioni , Marcus A. M. de Aguiar

The data-based discovery of effective, coarse-grained (CG) models of high-dimensional dynamical systems presents a unique challenge in computational physics and particularly in the context of multiscale problems. The present paper offers a…

Computational Physics · Physics 2021-02-10 Sebastian Kaltenbach , Phaedon-Stelios Koutsourelakis

The study of synchronization in populations of coupled biological oscillators is fundamental to many areas of biology to include neuroscience, cardiac dynamics and circadian rhythms. Studying these systems may involve tracking the…

Quantitative Methods · Quantitative Biology 2017-01-18 Kevin M. Hannay , Daniel B. Forger , Victoria Booth

Coarse-graining has become an area of tremendous importance within many different research fields. For molecular simulation, coarse-graining bears the promise of finding simplified models such that long-time simulations of large-scale…

Chemical Physics · Physics 2019-09-04 Feliks Nüske , Lorenzo Boninsegna , Cecilia Clementi

Previous results have shown that a large class of complex systems consisting of many interacting heterogeneous phase oscillators exhibit an attracting invariant manifold. This result has enabled reduced analytic system descriptions from…

Adaptation and Self-Organizing Systems · Physics 2019-05-22 Sarthak Chandra , Michelle Girvan , Edward Ott

Most real-world networks exhibit a significant degree of modularity. Understanding the effects of such topology on dynamical processes is pivotal for advances in social and natural sciences. In this work we consider the dynamics of Kuramoto…

Adaptation and Self-Organizing Systems · Physics 2026-03-20 Leonardo L. Bosnardo , Marcus A. M. de Aguiar

We formulate an effective-description framework for the dynamics of open quantum systems by extending the time-coarse-graining formalism to open systems. Our coarse-graining procedure efficiently removes high-frequency processes which are…

Quantum Physics · Physics 2018-01-17 Chang-Woo Lee , Changsuk Noh , Jaewan Kim

Higher order interactions can lead to new equilibrium states and bifurcations in systems of coupled oscillators described by the Kuramoto model. However, even in the simplest case of 3-body interactions there are more than one possible…

Physics and Society · Physics 2025-05-21 Guilherme S. Costa , Marcel Novaes , Marcus A. M. de Aguiar

The Kuramoto model provides a concrete mathematical realization of emergent synchrony in a population of phase-coupled oscillators. Since Kuramoto's publication, \textit{Oscillations, Waves, and Turbulence}, researchers have worked to…

Dynamical Systems · Mathematics 2022-03-14 Anthony Krueger , Sathyanarayanan Rengaswami , Rachel Leander

Higher-order networks with multiway interactions can exhibit collective dynamical phenomena that are absent in traditional pairwise network models. However, analyzing such dynamics becomes computationally prohibitive as their state space…

Quantum Physics · Physics 2026-04-23 Caesnan M. G. Leditto , Angus Southwell , Muhammad Usman , Kavan Modi
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