Related papers: On the Parameterized Complexity of Synthesizing Bo…
A Boolean network (BN) is a discrete dynamical system defined by a Boolean function that maps to the domain itself. A trap space of a BN is a generalization of a fixed point, which is defined as the sub-hypercubes closed by the function of…
Learning-based approaches to NP-hard problems have shown increasing promise, but their progress is fundamentally constrained by the high cost of generating labeled training data. In domains such as Boolean satisfiability (SAT), standard…
We study a variant of Min Cost Flow in which the flow needs to be connected. Specifically, in the Connected Flow problem one is given a directed graph $G$, along with a set of demand vertices $D \subseteq V(G)$ with demands $\mathsf{dem}: D…
The NP-complete Permutation Pattern Matching problem asks whether a permutation P (the pattern) can be matched into a permutation T (the text). A matching is an order-preserving embedding of P into T. In the Generalized Permutation Pattern…
Determining the satisfiability of Boolean constraint-satisfaction problems with different types of constraints, that is hybrid constraints, is a well-studied problem with important applications. We study here a new application of hybrid…
The Directed Traveling Salesman Problem (DTSP) is a variant of the classical Traveling Salesman Problem in which the edges in the graph are directed and a vertex and edge can be visited multiple times. The goal is to find a directed closed…
Kernelization---a mathematical key concept for provably effective polynomial-time preprocessing of NP-hard problems---plays a central role in parameterized complexity and has triggered an extensive line of research. This is in part due to a…
The maximum modularity of a graph is a parameter widely used to describe the level of clustering or community structure in a network. Determining the maximum modularity of a graph is known to be NP-complete in general, and in practice a…
In this paper we revisit the classical Edge Disjoint Paths (EDP) problem, where one is given an undirected graph G and a set of terminal pairs P and asks whether G contains a set of pairwise edge-disjoint paths connecting every terminal…
Biological and advanced cyberphysical control systems often have limited, sparse, uncertain, and distributed communication and computing in addition to sensing and actuation. Fortunately, the corresponding plants and performance…
The execution of different cases of a process is often restricted by inter-case dependencies through e.g., queueing or shared resources. Various high-level Petri net formalisms have been proposed that are able to model and analyze…
Bayesian structure learning is the NP-hard problem of discovering a Bayesian network that optimally represents a given set of training data. In this paper we study the computational worst-case complexity of exact Bayesian structure learning…
Parameterized complexity theory has enabled a refined classification of the difficulty of NP-hard optimization problems on graphs with respect to key structural properties, and so to a better understanding of their true difficulties. More…
Gene regulatory networks (GRNs) are increasingly used for explaining biological processes with complex transcriptional regulation. A GRN links the expression levels of a set of genes via regulatory controls that gene products exert on one…
Synthesis automatically generates a process model from a behavioural specification. When the target model is a Petri net, we address synthesis through region theory. Researchers have studied region-based synthesis extensively for…
The Set Packing problem is, given a collection of sets $\mathcal{S}$ over a ground set $\mathcal{U}$, to find a maximum collection of sets that are pairwise disjoint. The problem is among the most fundamental NP-hard optimization problems…
In a reconfiguration version of an optimization problem $\mathcal{Q}$ the input is an instance of $\mathcal{Q}$ and two feasible solutions $S$ and $T$. The objective is to determine whether there exists a step-by-step transformation between…
We settle the parameterized complexities of several variants of independent set reconfiguration and dominating set reconfiguration, parameterized by the number of tokens. We show that both problems are XL-complete when there is no limit on…
This article is devoted to propose some lower and upper bounds for the coupled-tasks scheduling problem in presence of compatibility constraints according to classical complexity hypothesis ($\mathcal{P} \neq \mathcal{NP}$,…
Many real-world networks exhibit correlations between the node degrees. For instance, in social networks nodes tend to connect to nodes of similar degree. Conversely, in biological and technological networks, high-degree nodes tend to be…